Array 1 155853-157868 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969037.1 Streptococcus oralis strain DD05 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 155853 36 100.0 29 .................................... TAATGGATTTGAATTAGTTGATATTTGTA 155918 36 100.0 30 .................................... GAAGCGAAATGGCGCTTGAGCCATTGGTTC 155984 36 100.0 30 .................................... TCAGTTAGGAGTATCGTTCTACGACGCCAA 156050 36 100.0 30 .................................... CACCAGACACCTGACGGTTTGTTTTCTCGT 156116 36 100.0 30 .................................... TACCAAACAATCCACCACCTTTTTTGTTAA 156182 36 100.0 30 .................................... AATTAGTAGTGTTCAAAGGTGCCACGGAGA 156248 36 100.0 30 .................................... GTACATAGCTAGCCTCTGCATCATTCAATA 156314 36 100.0 31 .................................... CTACAAATTTTGAGGTAATAGATAGTGATGC 156381 36 100.0 30 .................................... AAGTGTGATAGAATACTTCGATGTCTGTAT 156447 36 100.0 30 .................................... CAGCGACAGATGAAGCTCTACGCAAAATCA 156513 36 100.0 30 .................................... AGGAACTAACGGAGTTCCTTAAAGTTTACA 156579 36 100.0 30 .................................... ATCGTTATGCTTTGCGTGAAAAAATCAGTA 156645 36 100.0 30 .................................... TTCGTTAAGTTGCTTCGGTGGTTCAGTGGA 156711 36 100.0 30 .................................... TTCACTGTAATTGGGCGTATGACGGGATCT 156777 36 100.0 30 .................................... TGAAGCACTCGTTGTTTAAAACTTCCTCAA 156843 36 100.0 30 .................................... GCTCAGCTTCTTCAATGTCACCACCAAACC 156909 36 100.0 30 .................................... CGAAAACCTTCAACGATTTTACGGCCGATT 156975 36 100.0 31 .................................... TACTACTTAGCTACACAAGAAGAAGGAGACG 157042 36 100.0 30 .................................... AAAGTTACTGAGGTTAATGAACTTCAAACT 157108 36 100.0 30 .................................... CAGGAAACAGCGTGACAGTGAGTGTTATTG 157174 36 100.0 30 .................................... ATCGCTCGTGTGATTGAAGATTTTAAAATT 157240 36 100.0 29 .................................... TAAACAAGGATCTGGCTTCTTATCTATCG 157305 36 100.0 30 .................................... TAGACTTGCTCCCAAGACGGCTGCACCTAC 157371 36 100.0 30 .................................... AATCTAGTTGGCAAGACGTTAGCGCCCAAC 157437 36 100.0 30 .................................... TAAGCAGCATTTCTGATTTTTGGGATGGCT 157503 36 100.0 30 .................................... TTGGTGAAAAAGATATTGACGAGTATCCAG 157569 36 100.0 30 .................................... TCAAGGATGGTCTGACAGGTTTGTTGTACA 157635 36 100.0 30 .................................... ACAAGGTCACTTTCAACTTGGATCCCCTCG 157701 36 100.0 30 .................................... CTCCTTGTTCGTTTAATTCTTCAGCTAATA 157767 36 100.0 30 .................................... TTGTTAATATTGTCAACAGTCAGGTAATGG 157833 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTTTGATTAATCATAGCGATTCATTATATATTGTTTCATTTCCTTCCAATGAAGGTTATCTTCATGTATCGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATAAAAACAAAATTCCGTATTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGCACAAAAATCAAAATTGACGAATTTGAG # Right flank : CTGCAATTCAATTTATTGATTTACTCTCATTGTGATATATTCATACAAAAACCGCTCTCCAGAGCGGTTTTCGTCTATTCTTGCCTTTTGCTACAATACCCACGTACGGATAGCATGGGCAACGCCAGATTCATCATTTGTTTTGGTGATGTATTTGGCGATTTTTTTGAGTTTTGGATTTCCATTTTCCATAACAACGGGGTTGCCAACGACTTCCAGCATGGCACGGTCATTTTCTTCGTCCCCGATCGCCATGGTTTCATCTTTGGTCAATCCTAGTTTTTCAGCTAGATGGGTAATAGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGATTTGTTGATGGAGTAGCGTTCGTAAAATTCTGCTGGAATCTTTTCAATCGCAGCATCAAGAATCTCTGGTTCATCGATAAACATACACTTGACGATTTCCTTGTCAGCCATTTCTTCAGGAGTGCGGTAGAAGATAGGCATGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 314431-315217 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969037.1 Streptococcus oralis strain DD05 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 314431 29 100.0 43 ............................. GTTGCTTCCTACAACAAAAGCCAGAACCTCAATTCGTGATTCT 314503 29 96.6 47 ............................T TTGACTGTCTCCTATGAGACTTTTTAATTTCTCCCAGCAGCTCTTTG 314579 29 100.0 43 ............................. AATGTGGGTCTAGGTAATGTGGCTTCTCAACCTGACGTGAATC 314651 29 96.6 61 ...C......................... ATTATCTTTGGGCGACGATCTGAAGTGTCCCAGTGAGTGACTTGAACACTATAAGTTGGAC 314741 29 100.0 43 ............................. GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAA 314813 29 96.6 42 ...C......................... TTACTGTAATTCAGCAAGATCAGCAAGATTAATCAATAAACT 314884 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTCGGTGACAATCCTGCTTCTT 314962 29 93.1 44 ...C......G.................. CTCTTTGCCTTGGTTCATTTTATTTGCAATGCGATGAGCTTTTT 315035 29 100.0 40 ............................. AAACCAGATGGACATATAAATCCATGGTCGGCCAGCACAT 315104 29 100.0 56 ............................. GAATGTTTAACTATAGAGGGATTAAATATTAAATATTGTGTTTCTAGTTTGAATTT 315189 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ============================================================= ================== 11 29 96.9 47 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATTAATACTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATACGGCAGTTTAAGAGAATATTGCAGCAAGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTGTCAACCAAGCGTTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTACCCTTTGCGGCCAAGGAACTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGCGAGCGGTTAAAGTACGCTTATCGGCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAATGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 317290-318344 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969037.1 Streptococcus oralis strain DD05 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================= ================== 317290 25 100.0 50 ......................... GTGCCATCAATTGTAGGTTGAGCTTCAGCCCATTTGTTAATTTCATGTTA 317365 25 100.0 49 ......................... GCACCTGCTAGACCATATTTCTGCTTCAACTCATTAGCCTTTCTCGTTA 317439 25 100.0 54 ......................... ATCTCAAACTCTCTGCCAATATCAGAGAATTTCCAGAAAAAATCAAACTAGTTA 317518 25 100.0 48 ......................... AAAGATAGCTGCAATTGCGGTCATTTTTCTATTCTTGATTTTTTGTTA 317591 25 100.0 42 ......................... TTTTTCGCCGATGGTAATGCCTTTTAAATTTCCGAAGCGTTA 317658 25 100.0 48 ......................... TTATCCATACACCAATAACAGTTCTCTTGTTAGTTGATGTGTTGGTTC 317731 25 96.0 49 ...T..................... TTGTTCTAGAGACAGATGAATCATTATCATGAACTAAATTTTTGCGTTC 317805 25 100.0 47 ......................... TTTTCGCGAACTTCAGAATTTGAAAGTTTTGGACTAAGTGTTCGTTA 317877 25 96.0 49 .C....................... TCTCCTGAATAAATCAGTACAACCGGCTTAGTTTCGTCGTCTTCCGTTA 317951 25 100.0 45 ......................... TATACACACCATCAGCTTTTACACCCATCCAATAGGTTTTCGTTA 318021 25 96.0 49 .C....................... AATAAGGTTGGCGGATGAATACCTTCCGGCAAAGTAATGGGGACTGTTC 318095 25 100.0 55 ......................... CGTTTGCCATCGAAAAGACGAGTGTAATCAATTACAATTGAGTCACCTTTCGTTC 318175 25 100.0 50 ......................... TTTATCCCATTCGGATAATCTGCGCACTATAGGATAGTCTAGGTTAGTTC 318250 25 96.0 45 ....G.................... TTACACCAGTCTTTATCACAGGCTCCCAAATTTGTACTGTTGTTC 318320 25 84.0 0 .....................GCTG | ========== ====== ====== ====== ========================= ======================================================= ================== 15 25 97.9 49 TACCTTACCTATAAGGAATTGAGAC # Left flank : ATCTTGACATACGATGTACATCGCAAGCGCGTGACTAAGGTTTTGAAAACTTGCCGAAAATACTTGGTTCATGTGCAAAAGTCGGTCTTTGAAGGGCATATTACTCCAGCCAAGCTGAGCGCTTTACAAAAAGAATTAGCCAATATTATAGAACCTCAGACAGATTCTGTACAGATTTATCAGTTGGAATCCCCCAAATACACCAAGAAGATCCAAATCGGTATGGTAGAATCCAATGACTTTATTCTTTAGGGATTAAAGTGATGTCATAGTCAGTCAATCAATCGCATGAAGTGTCCTCTCCATGCGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCGATCTTTTCGATATTTTGTATCTTTTTCAAAAGCTGTCAACCAAGCTGTTTATAAGCGTTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTTGTTA # Right flank : GTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTAGGAAGCAGGAGAATTTGTTCGCCTTTTGTTTGGTAGGAATAGTTGAAATTTTTAGAAAACATAACATATAAATATGAATAAAAGTTGTAGGAGAGCTCCTTCCTTTTGTAAGAATTATCAAGAAAAACTCTTTTAGTAGGAGAGTTTTTTCCGTGCTTCAACCACAGATAGTATAGAGCTTAAGTTAGATAGCTGATCAGTTTTTTGTTACTTCATGATAGTGTTGTGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTATTTTTTATTTCATTTATCGAAAAAGACCTACTATCCAGTAGTCAATCCGACTGTACTAGTCCTTTTTCAGCTTATCTATGGTATAATAGAAGGTAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGATGGAGAGGGT # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 784638-784931 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ969037.1 Streptococcus oralis strain DD05 scaffold00001, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 784638 35 100.0 28 ................................... TTAGCAAGGCCTGCTGCAACGATATTCT 784701 35 100.0 30 ................................... AGGTCGGAGCTGCAACTGAAACTGAGTTGA 784766 35 100.0 31 ................................... CCTGCTCCAGAGTTAGCAGATGCCATGCTAG 784832 35 100.0 30 ................................... CTTCGCTCTCTGCCTCCCAACCTCCAAGTT 784897 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 5 35 100.0 30 GTTTTTGTAATCTCCAAAATTGTGACCGATAAAAC # Left flank : ATTAAACCAAGCAATCCAACCATCCATGCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTTAGTAATAAATCATCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAATGTAGTTACAAAGTAATTTCTAACTGAAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTGGGCTCTCCGAGGGGGCTTGCAGACAGCTACTCGACTTTTCAAGCCGAGTAGCTGATACCATTTGAG # Right flank : CCTCAAATCAAGCCCTCTGAAATCAGAGAGCTTGATTTGAGCTCGGGCTAAAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAAGACTGTGTCGTTTCTCTATTTTCATACGTTTTTTTAACGCCCTTAGCATCATAATTCTTGCTGGATAAAACGTTTATAGACTAGACGACAAGCCGAAGATTGTACAAAATTTTTAGTAAAACAAAAAAATCTCCCCGAAGGGAGATAATCTGGTTTATTTTACCTTACAGTGCTAGGAACCGCAACCGAAGATTATACTTGAGTATATCGAGGTAAGGTGACAACGCAATGTAAGTGAAAAATAAAGCAGATTAACGACGAAGTCCTAGAGAGTTGATCAACTCACGGTAACGGTTAACGTCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTCTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAAGGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAATCTCCAAAATTGTGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //