Array 1 102967-101479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGW01000013.1 Lacticaseibacillus paracasei strain BP07 contig000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 102966 36 100.0 30 .................................... ACTGTTTTCGTGTAGCCGCCGTTTTTAAAG 102900 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 102834 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 102768 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 102702 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 102636 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 102570 36 100.0 30 .................................... TATGATACTTTTCAGTTGTTGATCAACGGC 102504 36 100.0 30 .................................... TAACGTTTGTATAAATTGTGATAATTCTTC 102438 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 102372 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 102306 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 102240 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 102174 36 100.0 30 .................................... AAAAGAAAAGAGGAACAAGCGCATGGCATA 102108 36 100.0 30 .................................... TTGTAGTCAGCGTCATCATCATACCATGGG 102042 36 100.0 30 .................................... ACAGCATTGACCACATTCAAAAGCAAGACA 101976 36 100.0 30 .................................... TTGACGGGGTCGAATTGCCAGAACCGTTTT 101910 36 100.0 30 .................................... CCTTGTACACTTGCATGCCGTTTTCTACGG 101844 36 100.0 30 .................................... AGTGGGCTTAGTCACATATATTTTAGAAAC 101778 36 100.0 30 .................................... TGATTTAGATAATGAGATACAAAAATTTAT 101712 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 101646 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 101580 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 101514 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.3 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : TTAAAATACCCTCTCTTAAAAGTTGTCTCAGGAATCAGCTTACATCCAGTTCAAGAGCAACACCGCGTTATATACAAGGTTGACGAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 815-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIGW01000024.1 Lacticaseibacillus paracasei strain BP07 contig000024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 814 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 748 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 682 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 616 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 550 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 484 36 100.0 30 .................................... AAAATATTTCTAGAATTAGCAACTTTATGG 418 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 352 36 100.0 30 .................................... CGCAAAAAATGTTTTGACAAGAACACATCG 286 36 100.0 30 .................................... GGCCAATATCATCAGTCGGGAGATTGTCGC 220 36 97.2 30 ..................................T. ACTCGTCAATATCCTTCTGCATGATCAAGT 154 36 100.0 30 .................................... TATTATCCTAACACATCCATCGAGAAGTTA 88 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : CTGAATATTCTAATGTTGTTGGATTGAAGTCAATATTTGAGACAGATTTTAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //