Array 1 31447-33791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSXH010000016.1 Pantoea agglomerans strain Pa21-15 contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31447 29 100.0 32 ............................. GAAAGAGCAAGGCGCATAAAGAAACGCAGGAA 31508 29 100.0 32 ............................. GATGTCGGTGAGTTTTTCACTTCGCAGAATCC 31569 29 100.0 32 ............................. CATCATGCCGTTTGTCAGTGGAGCTAAATATC 31630 29 100.0 32 ............................. ACACTGGACTTCTCTGAATTATCAAATGAGAG 31691 29 100.0 32 ............................. CATCATGCCGTTTGTCAGTGGAGCTAAATATC 31752 29 100.0 32 ............................. ATATTGTCGCATAGGTTACCTGTGCAGCTTTA 31813 29 100.0 32 ............................. CTGCTTGAAGAGATGGATTTTAACGAGATAGT 31874 29 100.0 32 ............................. CCTGCATAGCGCGTGGCGATAACAGTCAGGTC 31935 29 100.0 32 ............................. GCAGAATTGCTTCAGCTTGCGGGTGATTTCGG 31996 29 100.0 32 ............................. TGCTGCTGAAGACATGAGATAGTCCTTATTTG 32057 29 100.0 32 ............................. GCCAGTCTCTGATGCAGTCATCAAGCCCATCG 32118 29 100.0 32 ............................. ATACGGCTGAAACAGCACTGAGTGATTTTGAC 32179 29 96.6 32 ...C......................... CCCGAGGGCCGCGATAATAGCGATCCCGGTAA 32240 29 100.0 32 ............................. TCAATAAATTTGGCGCAACGGATAACAGCTAT 32301 29 100.0 32 ............................. GCTCTTAAATCTCTTTTTTTAAATAAGTCTGA 32362 29 100.0 32 ............................. TAAACACGATGATGGCTCCTCGCGGAGTTGAA 32423 29 100.0 32 ............................. TGGACATCAGACCCGACGGTCGCAACGGAAAG 32484 29 100.0 32 ............................. AATGACCAGTCCATGCTTCGCCAGCATTGGAG 32545 29 100.0 32 ............................. ATGAGGAGCTGGCCAGACTTTATAACGCGGGT 32606 29 100.0 32 ............................. CCGGTTAAACGCGTGCTGATTAACGATAACAC 32667 29 100.0 32 ............................. GTTGTGCTGGAAAACGATTACCCGGAAGCAGA 32728 29 100.0 32 ............................. CCGGTTAAACGCGTGCTGATTAACGATAACAC 32789 29 100.0 32 ............................. TTCAGCCAACGAGTGAGACGGTTTCTGCACGT 32850 29 100.0 32 ............................. TAACAGACAGATTCTTGAGGGCAAATGCAGGA 32911 29 100.0 32 ............................. GTATTCCCATGATTTCAGAGGCTTGCCGTTTA 32972 29 100.0 32 ............................. GATTGCAGACGGCCGGTAAAACAACTGAGAAA 33033 29 100.0 32 ............................. GCACCGAGATCGGCAATCTCAAAGAGCTAAGG 33094 29 100.0 32 ............................. TTGGTATTCAGCCTTTCTGACTGAATGGTATG 33155 29 100.0 32 ............................. ACGGCGGATCAGCCTGTTTTCGTCTGGTAGAG 33216 29 100.0 32 ............................. ACAGCACAATCCAGCCGGTGAACGTGTGCGAC 33277 29 100.0 32 ............................. GAGGCAAGATTCTACATAAACGCTTAATCATG 33338 29 100.0 32 ............................. GTGTTAGGGCTTAGTCAACGTGCGCTGGGTAA 33399 29 100.0 32 ............................. TTGCTGGCCCTCAGTGCTGCAAACCATAACGT 33460 29 100.0 32 ............................. GCGTCGTTTACTATCAAGGCTTCGGTGTGCGC 33521 29 100.0 32 ............................. GCACTGGACGGCAGCACAGAACACCAGAGCAA 33582 29 100.0 32 ............................. TCTTTGCATTCCAGGCGGATGTCATAACCGGC 33643 29 93.1 32 .............TG.............. TAGTCAGTGGCCGGTGATGGAAAGCCCATGTC 33704 28 93.1 32 ..........-A................. CCGTGGTGTTGGCGTTCTGCTGTGACATGTTG 33764 28 82.8 0 .........A............-.C..TC | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATTGAGGATGTGCTTTCTGCTGGTGGTATTACACCTCCACCACCACCTAAGGACGCTCAGCCGATTGCAATCCCTGAACCTGCCCCTTTTGGTGATGCCGGACACCGGAGTGCGTGATCATGAGCATGTTGATGGTCGTCACTGAGAATGTACCCCCCAGGCTAAGGGGCCGGCTAGCTATCTGGTTACTTGAGGTCCGCGCCGGGGTTTATGTTGGTGATGTATCTCGTCGTAGCAGAGAGATGATCTGGCAACAGATTAGCAGGCTATCCGAAACGGGCAATGTCGTAATGGCATGGGCGAGTAATAATGAATCTGGTTTTGAGTTTCAGACTATAGGTGACAATCGGCGTTTGCCGGTGGAGATGGACGGTATCCGGTTAGTCTCTTTCCGACCTGTTGATAATCAATGAGTTAGCGATCTTTAAAAAATCAGATATTTTGGTAGAATTGGCAGTGGCAAAAAAACTGTTATAATTCAGTTGGCTACGTTTAGA # Right flank : CCGGCAAATCCCTGCCGATATTATTTTTCAATGCCCGGTCTATCCTTCACAAACCACTACAAATCCTTCACTCAGTCACACTCTTCTCCTGCGCCACCCGTTCAATAAACATCTGCGCCAGGGCAGTAATGGCGCTGTTGCCGGGTAGTCTTTCTTCATTGATATACATCACCAGCGAACTACTGCGTCGGCGGCCCTGTAACAGCGGCAGGGAACGGAGCTCACCGCTCTCTAACTGCGCGGTGATATTCTGTTCCGGCAGCCAGCCATAACCTAACTGATGCTGGACCGCTTCAATGGCTGCCGACAGCGTCGTGAAGGACCAGTTCTCCGCCTGATCGCCATTGACCTCTGACTGCTGCTGTTGCTGACGATCCAGAATGGTAATGCAGGGCCAGCGTGCCAGCGTAGCAGCATTAAGCGGGGCGGATTCGCGGTGCAGCGGGTGGTCGCGATGGGCGACGGCGACGAAATCGACACTCATCAGGCTTTCGCCTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //