Array 1 39947-34738 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSO010000007.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 1376 CIRM_BIA1376-i1-1_scf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 39946 28 100.0 33 ............................ CAAACCAAGGTAGACCACCAGATCTACTATGAC 39885 28 100.0 33 ............................ TTATGACGCTTATCACGCTTTACATGGCGAAGA 39824 28 100.0 33 ............................ CCATGATGTCCAGTATAAAGGCACGATGGGTGC 39763 28 100.0 33 ............................ TCAAGATCGCCGCAAAAGGTCTCTTTCAGGAAA 39702 28 100.0 33 ............................ TATAAGGTGAAGATGTTTTGATTTATCTTCACC 39641 28 100.0 33 ............................ TTCACACGAATCAACTGCTCCCGGTTATCCTGG 39580 28 100.0 33 ............................ CTAATAGATTATGTTGATCAAGCATACCGACTG 39519 28 100.0 33 ............................ CATTGGCCACAATGCCATCGTCTCCAGTTCGCT 39458 28 100.0 33 ............................ CGTTATAGCCAGCCACTAGGGTCAATTTAAAAG 39397 28 100.0 33 ............................ TTGGCTGAGGATGCGATCAGCGTTCCATCGTCG 39336 28 100.0 33 ............................ CGACTGAACGCTATTTGCATCAGATTGACCGGG 39275 28 100.0 33 ............................ TGGTTTGAGCGCCCCATGTCGTTTCGCCCCGGG 39214 28 100.0 33 ............................ CCACATGGTGGTAACCGACAAGGTTGGCGTCGA 39153 28 100.0 33 ............................ CGTGGATCGATTTCTTCTTTAGAAACACGGAAA 39092 28 100.0 33 ............................ CGTTTATGCTCTTAGCATAGCACTACTTGGACA 39031 28 100.0 33 ............................ TCAATGAGCCGTCATCGTTTACCATCGTGTCCA 38970 28 100.0 33 ............................ TAGTTTCTGCACAACCTTTCCTTGTCATCCTTT 38909 28 100.0 33 ............................ CAACTACGTGGTAGTCGCTCCGTCACCAGGCTA 38848 28 100.0 33 ............................ TGCTCGACCGGCAGATCCGGGCGCTTTGCGAGT 38787 28 100.0 33 ............................ ATCATCGGCGTCGTCATTCCTGCTCATGACATG 38726 28 100.0 33 ............................ TGAAGCGATCGAACTAGGGAAGGCGAAGAAGTA 38665 28 100.0 33 ............................ CATTGTCGACGAGTATGGCGTTGACGACTGGTA 38604 28 100.0 33 ............................ CTTCTTTGCCCTTAGGTGTCTTACTCATCATGC 38543 28 100.0 33 ............................ CGTGGTCGCCAAGGAAATCGACAACGTGATCGA 38482 28 100.0 33 ............................ CGAGACCAGTACTACGAAGAGATCAAGAGACTA 38421 28 100.0 33 ............................ TACTATCAAACATAATATAATCCTCCCTTAGAA 38360 28 100.0 33 ............................ TACTCGCCTAGCTTTTCGTTTTCTTCAGATAGT 38299 28 100.0 33 ............................ CCAAGCTGAAAAGGGGCTATCCATGCTTAAAAG 38238 28 100.0 33 ............................ CGGCCATAGTTACAGCCTCGCTCTGCCGATCAA 38177 28 100.0 33 ............................ CAGTATCACTCCCCCAATAACATTGGATTGCGT 38116 28 100.0 33 ............................ CCACAGCATGAATTGTTTGAGGGATCGCTTGTA 38055 28 100.0 33 ............................ CACGTCTTCAAGCCGAACCCCCACGCTTTCAGA 37994 28 100.0 33 ............................ CGCTGACACAGTGCGGGATTGGCGAGACATCAG 37933 28 100.0 33 ............................ TGTATGATAGTCTTGCAAGTCGGTTGCACTAGC 37872 28 100.0 33 ............................ CACAGCGGCGGACTTGGTCAAAAATTGGGAAGA 37811 28 100.0 33 ............................ CGCTTGTTGCCCAGCTAAAGCTGTAGTCACGTT 37750 28 100.0 33 ............................ TGTTAAACTTGTTGTTAATCATGTTTTTAATTG 37689 28 100.0 33 ............................ TCGTTCACGGGGAAGGCATAAGCTGGGCTGTTG 37628 28 100.0 33 ............................ TAACCAGGATGAACCCGGCTTCTCAAATGCAAT 37567 28 100.0 33 ............................ CGACCTTGAAAACTTGCTAGAGCTATTAATTTT 37506 28 100.0 33 ............................ AGCAGATAAAAATATTATTTTGGCCGCTGGTAG 37445 28 100.0 33 ............................ TGTATTGCAACTTTTGCAAGTAGTTAATGAAAC 37384 28 100.0 33 ............................ TATCGAAAACACAAACCGAGCTACAAATAAGTT 37323 28 100.0 33 ............................ CTACCGACAAAAACGGCGAACAAAAAGAGCATT 37262 28 100.0 33 ............................ TAACCAGGATAACGGCCGGCAATATAGCTAACC 37201 28 100.0 33 ............................ CGTGATGGCAAACAGAGCACCGGCAGCAATGGC 37140 28 100.0 33 ............................ CGAGTTTCTGGTAAAGGATAGAGAGGGCTTCAG 37079 28 100.0 33 ............................ CCGGCCGCCTGGTGATCAACTGAAGTAAGTTGA 37018 28 100.0 33 ............................ TTTTCAGTCTTGCAAGTAACTAAACCGTACTTC 36957 28 100.0 33 ............................ TGACGGCGGGGCCTTATATATTGACGGCGTCAA 36896 28 100.0 32 ............................ TGCTTTTTTTGTTTGTAAAAAAATAAACTGGT 36835 28 100.0 33 ............................ TCAACTGGAAGCTGGAACTGTATCAACTGGAAG 36774 28 100.0 33 ............................ CTAAACCGTACTTCTTTATCTTATACATGATGA 36713 28 100.0 33 ............................ TCGTTTCCGCTTCTTCTTGCCAATTTTTAACTA 36652 28 100.0 33 ............................ TTTAGCCCCAGAAAAAAACACCCCCCAGTCAAT 36591 28 100.0 33 ............................ TGATACTGAAGTAGTTGCTAGTAGGCGGCAAAC 36530 28 100.0 33 ............................ TGTTAAATCTCATTATTAAGCCTCCTTGGTTTC 36469 28 100.0 33 ............................ CGCCGTCAATTTGGCCGTCGGTCAACTTGACCC 36408 28 100.0 33 ............................ TGTCTGTTGCCGTTGCATGCACGTTTATAAGCG 36347 28 100.0 33 ............................ CAAAGGCATTCAAATTTATCTCAGTCACGGTAT 36286 28 100.0 33 ............................ CGGGCTGCCGTTGATCGACCGACTGCCGGCAGT 36225 28 100.0 33 ............................ TTCTGGCTCCCCGGATTGAGATAAAGGAGGACG 36164 28 100.0 33 ............................ TTTCCAAAACAATATCCAACACAATAACCCTCC 36103 28 100.0 33 ............................ CTACCGACTTTAGCAGCGAACCGACTTCGCCGG 36042 28 100.0 33 ............................ CTCAGTACCAACCCCTTGGAGCTTACGCCAGTG 35981 28 100.0 33 ............................ TAGTGCTCTGGAGAGCCAGAGCTAAGCTTCATT 35920 28 100.0 34 ............................ TAAACTGGTTCCAGTCGCCGGCATACATCTTGCC 35858 28 100.0 33 ............................ CTACACGCCACGATAAAGGAAATTCAAGAAATC 35797 28 100.0 33 ............................ TGTTTTGACAAGTTTTGACAGGTCTTTTAGGGG 35736 28 100.0 33 ............................ CTCAAGTTGGACAACGAAAATGCCGCAAAGCAA 35675 28 100.0 33 ............................ TAAACACACGCTCACGGTTCTGTGGTACTCCAT 35614 28 100.0 33 ............................ TGTTGCCTAACATCCAAAACGTCCCCGGCCTTT 35553 28 100.0 33 ............................ CATCGGCCGGGCAATCCCCCTCCCCTTGCCAGT 35492 28 100.0 33 ............................ TAACGAACAGTTCAGCCCAGAAATGCTGGTCAA 35431 27 96.4 33 .....................-...... TCTGCTTGTTTGATTGCCCCATGAACTTCATGT 35371 28 100.0 33 ............................ TTGATTGGCTGAACAAGCACGACTTTAATAAAT 35310 28 100.0 33 ............................ TGCGCTAATTTGCGAATTGTTTTTCGATGAAAA 35249 28 100.0 33 ............................ CTCTTTTTTTGTTTTCCTAATGATATTAAACTC 35188 28 100.0 33 ............................ TGAAAACGTAACAGGTCTTTCTAGCAAACTCGT 35127 28 100.0 33 ............................ TGAGCTGGCAGGACGCAGTGAGCAAGGTCTTAC 35066 28 100.0 33 ............................ CGGGATGACGATCAAGCGCCGCAGCATAGCGTG 35005 28 100.0 33 ............................ TAAGCACGTATCTTTTAACTACTAGGGGAGGTT 34944 28 100.0 150 ............................ TGGGGGACGTAGTACACCCCACTGTTATAGATCTATTTTACTTAATCGGCTGTGATCTCACTGCCATTAGTGAGTAACAAGGGGCGAAACAATATTCCTCACGTATGTGAGGAGAATTCTTTCTTTATGCTATTGTGTTTTTCGTACTGT 34766 28 75.0 0 ...........AT.T.C..A.A.....A | T [34759] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 84 28 99.7 34 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGACTGAATACCGAAACTGATCAGATTTTATCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATCACTTCTGAAATGCTAAGTAAGGAAGGCGTTCCATTGCAAGATGCATTGGAAGAACTGACTGACTTTGTTGGAAATGTACCAATTGTTGGGTACAATTTTAGATTTGATTCTGCATTTTTGAATAGGGATTATCGGAAATGCGGGATGCAAGAATTGAAAAACGAGATCAAGGATTTACTGCCAGTTGTAAAAAGAAGAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAACGCTGTGTCTGATGCAAGGGCTACGAAGGAGCTGGCGATGAAACTAATCAAAAATCGCATTCTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : TAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGAGAAGGAGTGAGGAACAAGCATGAGCATTTACGGTAAGTACGCCGATTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAGAACACGGGCAAAAGCTATACAAGCACCTGGAAGGTCGCGTCAAAGGCGAAGAAAGCATGGCGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGATGCCAGAGTCTGCATTGATCGAAAACCGGGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTACCGGTCATACCACTTGATCATGGAAGTAGTCACTCCCTTTGAAGACGTCCATGGCAACAAGCCTGGCATCT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //