Array 1 1880126-1879219 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO818640.1 Limnospira indica PCC 8005 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================================== ================== 1880125 35 100.0 35 ................................... GATCAATTGATGTAGGATCCTGATCGGAGTTAACC 1880055 35 100.0 35 ................................... TTGGAGGTAACGGCCCAGGCTCAGGGTCTGGCCTT 1879985 35 100.0 39 ................................... GACAACTAACAACATTAGATTCCATGCTATATGGTTCAA 1879911 35 100.0 37 ................................... AAGAAGGTCCCAACAGATGTGTGGGATTACCATTTTG 1879839 35 100.0 34 ................................... AGAAGAGGTATTTGGTTGGCATCCAAGCGAAGCT 1879770 35 94.3 33 .................................TG CTTTTCTTCTATTATCCCCTGGTTGAGGATAAG 1879702 35 100.0 36 ................................... TTTTTACATTCTTGTGTGTTACCCAATTGTTCCAGT 1879631 35 100.0 37 ................................... AGACCTTGGTGTGCCAGCGCCAGGTGTGCCATGTCCA 1879559 35 100.0 38 ................................... AGTTTGGACGGTACTGGTACTATATAGACCTCTAACGG 1879486 35 100.0 35 ................................... GTTTCCGATTCTTGCCGGCAGATGTCCTCAACCCC 1879416 35 100.0 47 ................................... GAGTTTGGACGGTACTATATAGACCTCTAACGGAAGCAGAGTTCCGT 1879334 35 100.0 46 ................................... TTAAATTAGCTGCCCCCCTAGCCCCCCAACTTTGGGGAGAAATATA 1879253 35 85.7 0 T...C................C...C.......C. | ========== ====== ====== ====== =================================== =============================================== ================== 13 35 98.5 38 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : GAGGAGTTTCGCGCCCCGGTGGTGGATTCGCTCGTTATCTATCTGGTAAATTCGGGAATTTTTACCCCGGAAGATTTTACCCCAAGTGACGAACGAGGTGGGGTTTATCTTTATTCCGATGCTCTCAAAAAATATCTGAAGCATTGGCAGGATAAGCTTTCCTTGAAAACGACTCATCCTCATACGGGTTACAAGGTTAGCTACTATCGGTGTTTGGAGTTGCAGGTTTGGGAGTATATTTCTTGCTTGATAGGAGAGCGGGAAGTTTATCGGCCTATGAAACTGGAAAAGTGGTAAACTAGAGTTTCCGGAGGGGTTCGACAACTGCTCAAACCTGCATTGTTTCGTTAACCCCCCCCGGAAAGCCTTCTCTCTCTGAGTTTGAGGGATTCTGGAGAGTATTTTATTGCAAATATGTCTCAATTATTTTGGTGCTTGCTTGACCCCCCCGGAAATGGAATGTTACACTCCAGTAATAGCAAGGGTTTCAACTCGGCACT # Right flank : CCCACCAACCTCCCCCTAAAAGGATGAGGCCTAATTTTTTTGCTGATTTGAAAATTCAACCTATAGAGCAAATAACTAAAAAAAATACCCCCCAAGTAGAGGGTATATTATTAAAATAAATTCAGTTTCTTTCCATACTTGATACCGGCTTAGAAGTCAAAGTGCTGCTATTTTAAAATGGGTTGTAAACCACTTAATATTCAGCTTGAGGAACCAGCTTTTGTAAAAAGTCATGTTTTTCAATTTGAGCTTTTACCGATTGAAAAGTTAATAATGTTCTTCCTTTCTCGCCTTTTTATGACTAACAATATAGACTCCCCAGGGCAGACGAACTCCTGTTAGAGTCGTGAACTTGAACTGAGCGTGTTCCGGGTTAGCAATATCCAAATCTGCCCAACTCAAATTGGTATTTTGTAAGTTCGTCTGTGCTAAATTTGTACCACTGAGATTCGCCCAACTCAAATCCGCATCCCTGAGATTAGCATAACTTAAATTCGCCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1885084-1884751 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO818640.1 Limnospira indica PCC 8005 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 1885083 35 100.0 34 ................................... TTTTTAGGATGCACTCGATGGCACAGCAGAGGCA 1885014 35 100.0 41 ................................... TAGTTTTTTCCTTCCTCCCTCTTATCGCGCCTCCCATCACC 1884938 35 97.1 34 ............C...................... AGTAGAGTCCCATCTAACATAGTAAAGGGGCGAT 1884869 35 97.1 49 ............C...................... ATTAACCTTCTGCCGTCTCCTGGTTGGGGGTAATTTGGGGGGTTACTTT 1884785 35 91.4 0 .....................C...C.......C. | ========== ====== ====== ====== =================================== ================================================= ================== 5 35 97.1 40 CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Left flank : TTTCTTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATGTGCGCTCAGAAGATTTAAAAAATCCCAAGAATCAGAAGATTAAAAATACGGTTCGTGTTTCCTGTTTACCCACAGAGATTATAGCACAAATGAGTCAAATTTATTGCTGTTTCGTTGAGTTGGTTTCACTTTCTGGCTTTCCAAATGTACAAGATTATCTAGAGGTGAATCAGAAAACGCGCGATCCGATTGAACCCTATTATCTTTACTCGGAAATTAAGGAATGGGTTGGGCAAATTTTGGATCACGATCAATAATCTTGTGGGGGTTGAAGAATCGCTGAAACCCTGATTCTTTCGTTGACCCCCCCGGAAAGCTTTCTCTGTCGGAGTTTGAGCGATTATTTATACCCTATTATTGCAAATATGTCTCAATAATTTGGGTGCTTGCTTGACCCCCACAAATTTGAGTGCTAGAGTACAGTCAGGGCAAGGGTTTCAACTCGACACT # Right flank : CCCACCAACCTCCCCCTAAAAGGAGGAAGCCTAATTTTTTTGCTAATTTGAAAGTTCAACCTATAGAGCAAATAACTTTAAAAAAATACCCCCAAATTTGAGGGTATATTGTTAGAACTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTGGTAAACCACTTGATATTCAGCTTGAGGAACAAGCTTTTGTAAAATGCGCTGATGATTAACTGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTCTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCCAAGAATTTGCACAAAACAGGGCAGGCTACCCTTGACAAAGTTAACTGTTTGTGCAGTTGAACCGCTCCTTGAATTCGGTCGGTAGCTCGTCCC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTGAAAGTTAAACGTATGGAAAC # Alternate repeat : CTTTAAACTTCTCTGAAAGTTAAACGTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 3907601-3904508 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO818640.1 Limnospira indica PCC 8005 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================== ================== 3907600 37 100.0 46 ..................................... AGAGGGCGTATATTGATAGCCCTCGCCGCCCAGTCGAACCCGGTAG 3907517 37 100.0 42 ..................................... GTCTTCGGAGTTCAGGGGTTTGACCCCCTCATCCTCATCCTC 3907438 37 100.0 41 ..................................... ATTGGGGCTCCGCTCCCCAGTCGTAGATGTCTTCTAAAATT 3907360 37 100.0 41 ..................................... TATTAACAGGGGATGGTTACCCAGTTTGGGAGCGACCCAAT 3907282 37 100.0 44 ..................................... CGAAGGTCTTGCCGGAGATCTGCCCACTTGTCCCGACGGCGGGT 3907201 37 100.0 43 ..................................... TCCACCTTCCCAAAGAGGGTATCTACGTTAAACACCTCCTCGG 3907121 37 100.0 46 ..................................... TTGATGCTCCCAAAACTCCAAAAAGTATGCCCAATAAGGCTATCAG 3907038 37 100.0 41 ..................................... TTCCTCAGGGCTGAATTTAAATACCCAGCGGGTTTTGAACT 3906960 37 100.0 51 ..................................... TCGCTCGCTCTTGCGAGCTATAGTTCTAGCTACCTCTTGCCAGCAAGAGGT 3906872 37 100.0 40 ..................................... TATTGATTCTAATTGCTTTTTATAATATTCTTTTGTATAT GT [3906844] 3906793 37 100.0 42 ..................................... TTTCAGACCGTTTTTCATCGTACAGCGTTACGTCCTTTCTTC 3906714 37 100.0 43 ..................................... TGTTTTTTTTAATTCAATATTAAACTGGTTCGATTCCAGTATA 3906634 37 100.0 44 ..................................... TTCCTCCGGTTTTGGAGGTCGAAGGTGCTGGGACCTCGACCTTC 3906553 37 100.0 45 ..................................... TTCTATTAATATTATTCTCATTTGTTATTTCCTTTTTTCTTCTGT 3906471 37 100.0 41 ..................................... ACTCCCTCTTGCTGGGAAGCAACTCGCTTGTTGAACAGGTT 3906393 37 100.0 40 ..................................... TGCAACGTTACGACAACAACGGTCTGGAGTTGGTCATCGA 3906316 37 100.0 46 ..................................... CTGTTACGATCGCAGCGCCGATTACGGCAGCGATCACTGCTGTTAA 3906233 37 100.0 46 ..................................... TCTCGCGGATATATGATCCGAACTTATCAGCAAGAAGAGATTCTTG 3906150 37 100.0 48 ..................................... TGGGTATTATAAGGCAATTCGACATAGAAGGAGCCCCCTTCTTCAATT 3906065 37 100.0 43 ..................................... GGAGCCCTCTTCCGAGTAATTGTTAAACCCCCATTGGTCCCGA 3905985 37 100.0 42 ..................................... CTCGACAGTGGCTTCTTCCTGCAGCCACTTGCCGTACTGCTT 3905906 37 100.0 44 ..................................... GCTGTACACATCCCAGTTCTGCCGTATGTTGAGATGCAACACTT 3905825 37 100.0 47 ..................................... CCGAGCCCACTAAACAAGTCGCAAGACTTAAACACGGTCGGGTGCGT 3905741 37 100.0 43 ..................................... CTAATTATTCCATAACGCAAAAATGCGAAAAACAAGAGTCCAA 3905661 37 100.0 42 ..................................... AATTGTTTTATCACTTCTTTTTGTTTTTTAACTCAATATAAA 3905582 37 100.0 47 ..................................... CCGAGCCCACTAAACAAGTCGCAAGACTTAAACACGGTCGGGTGCGT 3905498 37 100.0 43 ..................................... CTAATTATTCCATAACGCAAAAATGCGAAAAACAAGAGTCCAA 3905418 37 100.0 42 ..................................... AATTGTTTTATCACTTCTTTTTGTTTTTTAACTCAATATAAA 3905339 37 100.0 42 ..................................... AGAGGTGGTTGGCGATCACATTAGAATCCTTCCGGAAATCGA 3905260 37 100.0 42 ..................................... CCAAACTGTGCATCGATAAGATGCCAGTGACCAACTCCCCCC 3905181 37 100.0 39 ..................................... TATAAGTATAACATTAATATTTGTTCTTTTTAAAGAATT 3905105 37 100.0 43 ..................................... ATGAGGCGCCACGCGATGGCACACGTCTGTAGCGAGGTTTGAA 3905025 37 100.0 49 ..................................... CAAAATTGTTCAACAGGGATAGCCTCTTGGGGCGATGCCCTGCGTCCAA 3904939 37 100.0 51 ..................................... CGTCTCTCGCTCGTCATAAACCCCAGTTACTAGGAAGAATTTATCTTCCTC 3904851 37 100.0 44 ..................................... ATGCTGGTATAGCACCGGCAGGTCATGTTCGTATGCCAACCTTG 3904770 37 100.0 39 ..................................... GCTGTCGATGTACAGACTATTTTCTGTGAATAACCGAGG 3904694 37 100.0 46 ..................................... AAGCAAGTTGTTCGTAATAGCATACCGCTTTTCGGCTCCTGTCCAG 3904611 37 100.0 30 ..................................... TAAGCGATCGCCCTCCATTTTGGCGTCAGT Deletion [3904545] 3904544 37 91.9 0 .........G...........AC.............. | ========== ====== ====== ====== ===================================== =================================================== ================== 39 37 99.8 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTAAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCCACCAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCCTACGAACCACCAGACTTTCTCATTTTGTAAGGGTTGCGATCGTCTCATTTTTCATCACTTTGGGGCTGAAATGCCTTTGAGCCAATGATTTTCAGCAATGTAAAGTTATATTGCATTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAGGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CGGCGATAAAACCGAGTGGTCAAAAAAAAAAGCGCCAATGGTGAAGTCTTGTTAATCAAAGTGTGGGGGGGGTTGGGAAACCGTGTGAGGAGAAGATATTTCCCATCAATTAACCTTCCACTTCCTGATTAGTTGGTTGGGGGGAATTTCCTAACCTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAACCAAAATGCTGAATTTCCAGAAAGTTAGCATAAGCAGGCGCCGGTTTATAAATCCTAAAACTCTTCATAATTCCCAGCGTCGCCGCGCTTTCCAGGGGACCCACAAAACTACTATCGCGGTCTAAAAAATAAGGCTGTTTTACCCAATGTTCCATCTGGTTATTATTCAGGAAATAACAGCCAGCGTGGGGGTTTAAGCTGCGATTAAATTGAATGGGTTGTTCCATCACTTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCGGTTACATGGGGTAATAAATCCCCATCCACATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 4 5224335-5220621 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO818640.1 Limnospira indica PCC 8005 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================== ================== 5224334 29 100.0 49 ............................. GACGGAAACAGAGATTTTGGCGCTCATCATCGAACGATGATGAAAACAA 5224256 29 100.0 44 ............................. GACGGAAACGAGTTTTAGTTAGTCAGTTTTTTTAACTAACAAGA 5224183 29 100.0 51 ............................. GACGGAAACCACGACACGCATAATGAGGTTTTCGATGAACTCCCCATCTAT 5224103 29 100.0 51 ............................. GACGGAAACTCTCGCCATTTGGCATGAAGGGCAGAGGATCCATCAAACAGG 5224023 29 100.0 53 ............................. GACGGAAACCCAAAGAAGCTGCCCCAAAGGGGAACTTTGAGACCCAGAGGAAT 5223941 29 100.0 52 ............................. GACGGAAACTGGGAAGTTGCTTCCTGGGAAGTTGCTTCCTGGGAAGTTGCTT 5223860 29 100.0 50 ............................. GACGGAAACCCTCTTTAGTTTAAGGATTTAGTGTTTGAACCGCTTCAGAA 5223781 29 100.0 49 ............................. GACGGAAACATACCTCCAGGGACTTATGCCCTTTTTGCCATCAAAGATG 5223703 29 100.0 52 ............................. GACGGAAACTAACCAATTGAGCCTTTTTGGCTCATCAGGAGCATCTTTGAGT 5223622 29 100.0 50 ............................. GACGGAAACATACCCCAGCCTCCCTCGGACTCCTTCCCTCCGGTCCCTTT 5223543 29 100.0 48 ............................. GACGGAAACTCCTTAGTCATTTCCTTCGCCAGCCAAGCCTGGCTAATA 5223466 29 100.0 47 ............................. GACGGAAACTTTCCCCCGGCTCTCTCGGAGCCATCCGATTGCTCGGA 5223390 29 100.0 52 ............................. GACGGAAACTTCCTTCTGAGCGGCAATAATCTTGGTAGACTCCAACATGAAG 5223309 29 100.0 50 ............................. GACGGAAACTTTTTATTTGCCACCATAATTGGGTGGAAGTTTTTTTCCAC 5223230 29 100.0 51 ............................. GACGGAAACACTCCGGAGAGGACTGCTCCTCTCACGGATTCTTGTGTGTGA 5223150 29 100.0 52 ............................. GACGGAAACCACTAACCTTTCCATTGTGGAGAATCCCTGCCCCGAGTGCGGC 5223069 29 100.0 55 ............................. GACGGAAACCCTCGTATACGATCCAAATGACGATCAGGATGGTCATGTTCCAGAC 5222985 29 100.0 48 ............................. GACGGAAACCTAATCGGAATAGTTTTAACTGCTGGTATTATGGTGATG 5222908 29 100.0 49 ............................. GACGGAAACTTGAACTTCAACTTCTTGAACTTGTTTAAAATTAATCATT 5222830 29 100.0 54 ............................. GACGGAAACGGTTATAATGACCTTTGTGCGGCTTCCCCGCACCTCAGTCCCATA 5222747 29 100.0 53 ............................. GACGGAAACAAAACCTGAGTCTGTTTGTAAAGAAAATTGAGAAAAGAAATCTT 5222665 29 100.0 51 ............................. GACGGAAACTCGGAGGAAAAACATATAGCCGATCGCAGCCTCTTGTCTGAA 5222585 29 100.0 48 ............................. GACGGAAACGCCCAACTAGGAACTTTTTGTTGTGCTAACAGTGATTTG 5222508 29 100.0 55 ............................. GACGGAAACAGCCATAGTTGACCTGCGTGTTAGTGTTAAGTTGACTCAAACCTTG 5222424 29 100.0 55 ............................. GACGGAAACTTTGCTGATAAGACCATAATGTCTCCTAAACTGTTCTGAAATTGCA 5222340 29 100.0 55 ............................. GACGGAAACTTGCTATAAGTGTTAAAGTTGTCACTACCCCCGCTATCAGCGGGGG 5222256 29 100.0 47 ............................. GACGGAAACACCCGGTCCATCCCTTCGGAGGACTCCAGGTACATCCC 5222180 29 100.0 55 ............................. GACGGAAACGTTAAGGTGCAGAGCCACGCACCCGACCGTGTTCAAGTCTTGCGAC 5222096 28 96.6 51 .................-........... GACGGAAACAACCTAAAGAACACACCAAAACGTCCCAATCAGAAAAATATT 5222017 28 96.6 54 .................-........... GACGGAAACCATGAGCAATGCCGAATGCCCGGGCGCAACTTGGTCAGTTATAAC 5221935 28 93.1 55 .................-A.......... GACGGAAACTAGCTTCCGCCCTTTGGCGGCGGATAGAATGCGATCCGCTTTCGCG 5221852 28 96.6 53 .................-........... GACGGAAACCTTACTTAAAAGGTAAGTAGTCAAGGGTTTTAATGTAAAAAACG 5221771 28 96.6 50 .................-........... GACGGAAACAACTTTTTGTTCATAGGTCGTTTTAAAACTTTTCGCTCCAA 5221693 28 96.6 50 .................-........... GACGGAAACTCACCTAGCAAGTTTCTTAAGTTCAGCATTCTTTTTTTTAC 5221615 28 96.6 46 .................-........... GACGGAAACTTTTGATAACTTAATACCAGGCGAGGTGGGTTTTAAT 5221541 28 96.6 50 .................-........... GACGGAAACTCTGAAAAATTCCTTGCTCCAGAAATAGCTTTTAAGATTAA 5221463 28 96.6 53 .................-........... GACGGAAACGCTCTACAGGAGAAACCAGCCATACTGTAATAGCAATACTCATG 5221382 28 96.6 51 .................-........... GACGGAAACATTATTTCCTGGCTCGCAACAAGCCAGTCCCCATCTCTCCCC 5221303 28 96.6 51 .................-........... GACGGAAACCCGAACAAGAGTAACCGTTCGGGAACCTTCATAATACATCCT 5221224 28 96.6 62 .................-........... GACGGAAACTTCTCCGCCTTGTAGGCTTCGATCTGGGAGACTAAATCCCAGTCTTCACACTC 5221134 28 96.6 59 .................-........... GACGGAAACAGAAGAATGGGGAAAATACCCCCTAATGGAAATGATAAACGCTCTTCGAG 5221047 28 96.6 53 .................-........... GACGGAAACCTTAAAGAATCCCATCGCGAACGCTGGTTTTCCCACCATATGTG 5220966 28 96.6 52 .................-........... GACGGAAACCGGGCTAAATTTTCTAGCCAAGAAATTAACCTTTTCTCGCTCG 5220886 28 96.6 51 .................-........... GACGGAAACCTAAGTTTATAGGCAACCTCCCCTATGTAATTAGAGGGTTTT 5220807 28 96.6 52 .................-........... GACGGAAACGACCAGAGAGTGGCGTTTGCTTTGACTTCGTAATATTTACAGC 5220727 28 93.1 51 ....................G-....... GAGGGAAACCGACTAATAGCCCCGACATTAGTGATGAATGACTGCAGCCGT 5220648 28 82.8 0 ..G.........A........A-.G.... | ========== ====== ====== ====== ============================= ============================================================== ================== 47 29 98.2 52 GTCCAACCCTACCAATTCCCCCGTCAGGG # Left flank : AGGTGATTAATCCACCATTGTACAGGTGCATTGGATTCAGTTAAACGCGCTACGGACAATCGGGATATTTAATTACCCCTCCGACTTGACTCTGGCTGCTACGGTTTTGCTTAATTGTCGCCTCGCCCCTGTCCCCCGGATATGGTTGGCGAGGTGATTCTCATAATTATTTCCGTTTTTTGGGGCGATCGTGCCTACTTAATCGATGGATTCGTTGCAGGGTAATGGTTTCGGCTTGTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGACTTCTAATCCTGCCCTAGTTAAAGCAAACTTTAGCCACGCGAAGAAAAGTTTTTGTTTCGGGGGGTTGACAGTCTGGCACTATGGCTGATAATATAAATCCAGCGAAAACAAACGAATTTGCTCCCCGAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGCACCTTGAAAACCGCATACCGTAAGGTTTCCAAAGGTATAGG # Right flank : GAGGGAAACGCCGGGTGGTGTGTGGATGTTGTGAGGGTTGAGGTCGTGTCATGGCGGGGTAATTTCGCAGTTGGGGAGGGGGGAAAAAGACCAGTCTGGGGGATAAAACTTGTTGGGGGTGTAGAAGGGTTAGGGTTGGGTTGAGGCGTGCAAAATCCGATTAATAATGCCACTGGTAGAAGTAGGCATTTCCACGGCAATGAGGACGATTTTACCGTTATAGGCTTGAACCGTGGGGGCCTCCGGTAGGGTGTCAATGGTGTAATCACCACCCTTAACATATATATCAGGTTGTAGCTGTTCAATAATCGCCGTAGCAGTGCTTTCTGGAAAAATGACCACTGCATCTACGGGTTTTAACTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCGGCCGAGTGGGGTTTAATCAGGCGAACAGAGCGATCGCTATTGAGACCCACTACCAGCGCGCGCCCCAAACTTTTGGCTTGGG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCCGTCAGGG # Alternate repeat : GTCCAACCCTACCAATTCCCCGTCAGGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 5295804-5296880 **** Predicted by CRISPRDetect 2.4 *** >NZ_FO818640.1 Limnospira indica PCC 8005 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5295804 37 100.0 45 ..................................... TTCCTGTAACACTACCCTTCTCGGCAATCCAGGATGTGCTTCGGG 5295886 37 100.0 45 ..................................... CCTCCCATTAGGAAGTGTATAATCATCAGTGCCCAGAGGGGGCAC 5295968 37 100.0 40 ..................................... TTACGTTTAGGTTTGGAGACATGGGTATTATAAGGCAATT 5296045 37 100.0 44 ..................................... TTGCGAACCATCAAAGGGGGAACGGTGACCCCAATGACCATCGT 5296126 37 100.0 45 ..................................... CGGGCAAGGGGCAGGGTGGCACTTCTTCCTTGAGGATCTTCTCGG 5296208 37 100.0 46 ..................................... TTGCCATAGACTACTATGTCGTAGTCTATGTGTTTCTTCCCCCATT 5296291 37 100.0 43 ..................................... ATTCCAACGTTTAGAGCGAGGAACAAGGCATGAAATCTACATT 5296371 37 100.0 39 ..................................... CAAATTTAGGGTCATTAAGTAACACTCCGACAAAAGGCG 5296447 37 100.0 40 ..................................... TATTCCCCCGCCCACCACCTCTCTAACCAGCCCCTGTCTG 5296524 37 100.0 44 ..................................... AAGTTTAGAATCATGAGTAGCCATAGGGGGCACTCGACTCCCAG 5296605 37 100.0 39 ..................................... TTAACCGTTCCACAACTTATTGCGATTTTTTATGATGAG 5296681 37 100.0 44 ..................................... AATCCGGTGAGCATCATATCTTCGTAGATATGCTCCCATGCTCT 5296762 37 100.0 45 ..................................... ACTTTTAGACGGAAGTTTTCCTCCTCGTCCGTCTGGAACTGGACG 5296844 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 14 37 100.0 43 GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Left flank : TCGTTGATTTGGTGGCTAATCTTGGTGACAGGTTTCCCGACAGCCAACTACACCTCACGCCACCCCTAGACCATAGCCCACACCTGGGCGATTTGATTTGTACTTGGGCGGAATCTTGCCTCTAGGATACCACCTGCCTGCTGCAGTGGGTGGTGATTCTCATAATTCTTTCGGTTTTGAGAGGCGATCGACACTCCCTAATGGCTCTGTTGCTTTGGGGGTAATAGTTTCGGGGTTTGTAAAGTTATATTACAGATTCTCATAACCTCGCGCGAGTTTGAATAGGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCGCTGTCTCTGATAGTATTAATTTACGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTAGTCTCGCGCGATCGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGTATAGG # Right flank : CCGTTTCCGCTATTTTTGAGCCAACCAGACCATTGAGCCAACCGGACGATCGCATTTCCCAGACGAGGAAAGCGAAACTGCAGAAATTAGTTAATTTGGAGAGCGATCGCCAGGTATAATTTTCTGTGAGGGAATTAACTCAATCCATGGCACCAAGTTCATTGACACCAGAAACACACCTACCAACTTTCCCCGTTTTGGGATTACCAGTACATCTGGCTGATAATTATAGCCAGTGGCTGTCATCGCGGCTGAGTCAGGGTTTGGGAACTAATGTCATCACCCTCAATGCTGAAATGGCGATCGCCGCCGAATCTAATCAACCCCTAGCCGAATTAATCCGAAACGCCGACCTAGTAATTCCTGACGGTGCGGGGGTCGTGCTTTATTTAAAATTCAAAGGACACCCTATCCAGCGTTGTCCGGGAATTGAATTAGCCGAAACCCTCCTCCATGAGTTTAACCAGCTAATACCCTCTGGATTGGTGTTTTTTTATGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGTCAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //