Array 1 19519-19914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNY01000007.1 Streptomyces lavendulae subsp. lavendulae strain ATCC 13664 Contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19519 29 89.7 32 ...C...................A.T... CGACACTCCTTGGCTACCTCGTCAACCTCAAG 19580 29 89.7 32 ...C...................A.T... GTGCCGGATACCTGCACGGACCGGGAGTCTCC 19641 29 96.6 32 ...C......................... GTCCAGGTCCGGGCCGAAACCCGCCACCGTCG 19702 29 96.6 32 .................A........... TTCGAACCAGAGCTTGCCCGCCAGGGTGATCT 19763 29 100.0 32 ............................. CGGCCCAAGCACACGCCCGGCGGGATCCAGGT 19824 29 96.6 32 .........................T... GACCTGACCCTCACCCAGATGATCCGGATGCC 19885 29 93.1 0 ..........T..A............... | A [19908] ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGGTCCCCGCGCGTGCGGGGGTGTCCCC # Left flank : GTCTGCGCCCGCGACGCGGACAAGCTGGAATGCCTCCTCCAGGGCATCGAGTACAAGGCACAGGGCTACGAGAACGCCCAGCGATGGATCGACAACAGCCGCAGCCGCCTCACCACCGCAACGGCGAACCGCCTGGCCGACGAGCTCCTGGCCCAAGGGTCTCTCGACTGGCTGCGCACGGCTCTCGGGGAGGGCAAGGAGTAGCCCTGGGATGCGGCGGAATGTGAAGTCCGGCCGCATCGGGAGGCTATGCCCTTCGTGGGGTGGGCGAGGGCCTGCGCGTTGTCGCCTTGGGCGGCTTTGGAAGCTCATCCAGGTTGAGTGTGCTGCGGGAGGCTATCGAGATCGCCCGAGTGCTGATGGCGGGCAGATGGCGGAGCCGTGCATCGAGATGATGGGGCTGCACGACTCCGTAACGGGGACAGCTGGGAGATATGTCCGTTTCTCAAGAAGTAGGTAAAAACGAGCCTCTGGCTACCTAAACCCGCAGGTCACAAACT # Right flank : CCGAAGCGCGGCCAGAGCCCCCTCACGCGAAGAACACACGGCCGCCGCCGCATCCCTCGGAGACGGAAGGAGCGATCTCCACCAGGCGGCCGTCGACCGCACCCCGCAGGAACGCCGCGAGCTCCGCGGGCACGCCCACTTCAACCGGTCATCAGCTTGCCCAGACACATCGCTCCAGACACCCCGAAGCGAACCAACACCCCACCAGCTTGACCAAAGGCATAGGAACACCCCCGTGACGCCGGTCAGTCGGGAGTTGTCGGCCTCGACGCGCCGGGGCTGGAGAGGCGCCGCCCCCGCCCGAGCCGCCTAGCCCGCCGCATGCGCGACACGCTGGAGAGCCCGACCGGGGACAGGAAGCCGTCGCCCAGGTCCCCCGATGTCGGGGCGCGGATGGGCGACCTGCACGGTCTGCTCGGCAGTACGGGAAACCGGATGCGCGGATCGGCTCGGCGAGGGCGTGCCAGGCGTCGAGCCGGGCGCGCGGTTCTTCGGGGTGG # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTCCCC # Alternate repeat : GTGCTCCCCGCGCGTGCGGGGGTATTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 863-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNY01000039.1 Streptomyces lavendulae subsp. lavendulae strain ATCC 13664 Contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 862 29 100.0 32 ............................. AAGGACCAGGGCGCGAGGCCCGCACGGGAGAG 801 29 100.0 32 ............................. GGAATTGACCCGCTCTGCATTTCGCAGGCCGA 740 29 100.0 32 ............................. TCGGGCATTCCGGTCAAGTTCCATGAGGGTTG 679 29 100.0 32 ............................. GCGGCTGAGGTAATTCGGACCGCCACGCTTCG 618 29 100.0 32 ............................. GTCGTGGCGCTCCCGCGCCATCGCGAGTCGTT 557 29 100.0 32 ............................. CAGCTCGTGAACGCGCGGCCGCCGCCCGCACC 496 29 100.0 32 ............................. CCGTCAGAGAACGCACCAGCACAACCGGAGGA 435 29 100.0 32 ............................. CAGTAGGCGCCCATGCAGCCAGCCTGGACGCA 374 29 100.0 32 ............................. CCCTCAGCCCCGTCGACCTGCGGGCCACCCTC 313 29 100.0 32 ............................. CCGGCCCGGGCTGGGTCACCATGTGCGCCGCC 252 29 100.0 32 ............................. GCGCGGGTGATGGCGACGGTCGCCCCGAGCTG 191 29 93.1 32 ...G........................A TGATCCACGTCGACGTCGCGGTCACGTGGTAC 130 29 82.8 32 ...G......T...C.........G...C ACCACCCGCTTTCTGGACTTCTACGCCGAAGG 69 29 82.8 0 ...G......T...C.........G...C | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.0 32 GTGATCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : TCGCGGATTCCAAGCAGGACTATCCCGGGGCCGCCAAGATCATCGACCGGGTACTGAACCTGGAGGACGAGCGGCCCACTCCGGTACAGCGAGTGCAACTGCTGGTCCTACGTGGAGACATCGCGCAGCGGCTGGGTGACACGGAGGGGGCTCGGGGTTGGTTGGAGGAGGCGGCATCGGTCCAACTCAGCACCGAGGAGCAGGAGGCCGCTCGTGATGCCCTTGCGCGGCTGAGGGATCTGCGGGGGTGAGCGGGGCGGGGACGGGGTTGGTTGGTCCCGGCTGGCCAGTGTGCGCTTCCGGGGCCTTGCCGAGGCCGATAGCCACTGCGTGATCATCGGATGCTCTCTGGCGTGAACTTACCTGCGCACCATGTTAGTTCGGCAGGCGCGGAAGTGCCGAAACCACGTCAGCACCCTCTCTGTCACTATGCAGGTGTGAGTAGCGAACGCGAGGGTCAAGGATTTGCAAAGCCCCCATTAACGAGCAGCTCAGGAAGA # Right flank : CGTGAAGCAGGCGCAGCGCCGCAAGTCCGCCCGGTGGTCCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-137 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNY01000173.1 Streptomyces lavendulae subsp. lavendulae strain ATCC 13664 Contig173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1 14 43.3 31 ----------------.............G CGGCGGCCGAGGCGAATGACGCCGAGCTGGC 46 30 100.0 31 .............................. GCATGTGCACCAGGTAGGCGGTGCTGTCCTG 107 30 93.3 0 ............................TT | C [116] ========== ====== ====== ====== ============================== =============================== ================== 3 30 78.9 32 GTGGTCCCCGTGCACGCGGGGGTGGTCCCA # Left flank : | # Right flank : TCCTTCAGGGCGTCGGCGACCACGTCGGTGTCGTGGTCCCCCGNGCAGGCGGGGGTGTTCCGTTCGCCTTCGAGTCCCGCTTCTTTCCCGAGCGGTGGTCCCCGTGCAGGGCGGGGGTGTTCCGCCCGCGAGGACCTGGAGGCGCTCCGGGCTGCTGGAATTCAGACGAGCGTCTCCCAAGTTGCCAAGGTGCGCACAGCGGTAGCCAGCTGGAAGGCGGGCCGGACGCCCGCGTTGCTCCTTGCGCACCATCTCGACTGGGAGGCGCGACGTTCGCCCGGAGTACCGCACCCACCCCGACCGTGGCCTCATGGCCATCATGGCAACCGCCGAGGCGTGCGCCGCAGTTGGTGCCGCCGCACGATCTTGTACCAGGGCTGGCCGGTCGCGGCCGTGCGCTCCAGATCCATCAGGGACTCGGGGATGTCGATATCAGTCACGGCCGGAATCGCACGGTCCCGTGGTGCCGCCCCGAGGCGGGCCTGGACGGTGGTGTGTTT # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:-0.05, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGTGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3485-4428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPNY01000173.1 Streptomyces lavendulae subsp. lavendulae strain ATCC 13664 Contig173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3485 30 100.0 31 .............................. TGTTCGTCTCACAGTCGCACTCAACGCTGTT 3546 30 96.7 31 .............................C TGACCGGAGACCCTGAGCTCCGGTTTACGCC 3607 30 96.7 31 .............................C CGGTCTTCTGGACGAACCCCAAGTACAAGCA 3668 30 96.7 31 .............................T GGCGGGTGCCGCCGGAGGACAGGTCAGCGAA 3729 30 96.7 31 .............................A ACCGCTGGATCAGTTCGCTGGTCGCCGGGGA 3790 30 100.0 31 .............................. ACGGGCTTGTGTCGCTGATGCGGAACTCCGA 3851 30 100.0 31 .............................. CTTGATGGTGACGCAGGGCATCCGCTCCGCG 3912 30 96.7 31 .............................T GCCCTGGCTGTTGTACCAGTTCACATACGGG 3973 30 100.0 31 .............................. AGGCCGTATTGCTGGCCCCCTCACTCCGGTA 4034 30 96.7 31 .............................A CCCCGCCCGGACCGCGGCCTCGGCGCGCATC 4095 30 96.7 31 .............................A ACCCCCGCCAAGTCCGCAGCAGGACATGCGG 4156 30 96.7 31 ........T..................... TCAGCCACGTCTTCCGCGTGACCGGCGACAG 4217 30 96.7 31 .............................A GGACACCGGACGCGGTGCCGGTGAATGCTTG 4278 30 90.0 31 .......T..........C......C.... ATCACTCCGTGGATGCGCTCAGGTACGCCGT 4339 30 90.0 31 ..............T..A......A..... CAGACATCTGATCCGGCTGCCCGCCGACGTC 4400 29 76.7 0 .............-G......AA..G.TG. | ========== ====== ====== ====== ============================== =============================== ================== 16 30 95.4 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : TGGAGGGTGTACGCGTTACCGACGTCGGCACGGATCTGCTGTGCCGACCGTGCGCGGTCGGCAACTACCCGCGGCGCGTCGACCTGTTCCCGCCGCTCGGTATCTACGGGCTGACGGAGCGCCGGATCGAGCAGGGCCGACACGGCAGCGGCCCGCCGCCGACCCCGCCGAACCCGGGGCCCGCACTGACCAACCTCCGCGACCTGCTCAAATCCGTCTGAGGCCGATGGGCCACAGATTCCCTGGTCGACCGGGCATGCACCGAGGGCTGGGGCGCTTGCATGGCAACCATCCGCCTCCGAAAGGCGTCCCGGACCAGCCGTGTCTGTCCTCGCCAACTCGGAGAAGTCGGAGGCCCTTTGCAGTCAGTGAGGGCAGAATCACTTGCGACATACACAGCATCGAGCACAGCCCGCCCGCACCTCGGGGGAGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACAAGCCTCCGCCCGCATAAACCCGCAGGTCACGAACT # Right flank : GTGGGGTGGGGGCGGCAAGTGTCCGGCTGGTTCGATCATCCTTCAGGCGTGCCGCACCCGAGCCCCCGACCCGGTCCTCTCACCGCCCAACTGGCCCTACTTCGCGTATGGCGCCGCCGGCGGAGCACATGGGCCGCCGCCTTTTCCGGACGCGGCGGGGAGATCGGGCGCTTCGGTGGGGGTGGGGTCTTCGGCGGGCGGTCCGGGATGTGCTCCCGGATGTGGTCCGACACGGTGGCTCCCAGGGGCGGCGCGGGCCCCAAGCGTAGGAGCGGTGTTACGGCTCGTTGCTGCGGTCGGCCGTACCGTCACCCGTACAGCGGATGTCATCCGCCGGAGGGGGGCTCGCCCGTCGGTGCGCCGCTGGGTGGCTGCCCTCCTCCTGGGCCGGGGCCGCCGCCTCCTCCTTCCGGTGCGTTGCCGGCCGTGGGCTCGGTGCTGGTGTCGATGGGGACCGTCAGCTTCGCCGTGTAGCCCGCCTTCGGTGATCCGGTGGTGGC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //