Array 1 9536-8225 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJE01000588.1 Escherichia coli strain SI-P076 sequence588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9535 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 9474 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 9413 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 9352 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 9290 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 9229 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 9168 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 9107 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 9046 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 8985 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 8924 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 8863 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 8802 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 8741 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 8680 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 8619 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 8558 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 8497 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 8436 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 8375 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 8314 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 8253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATAAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13-957 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJE01000635.1 Escherichia coli strain SI-P076 sequence635, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 33 ............................. GATTACGATTGCGTTAATTTGAAAAAACGCGAC 75 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 136 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 197 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 258 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 319 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 380 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 441 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 502 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 563 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 624 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 685 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 746 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 807 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 868 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 929 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4982-5376 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGJE01000717.1 Escherichia coli strain SI-P076 sequence717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4982 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 5043 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 5104 29 100.0 32 ............................. CCGCGCCAATACTTCTGGGGCTATCAATCCCC 5165 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 5226 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 5287 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 5348 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATGTAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //