Array 1 6931-7185 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYV01000045.1 Cyclobacterium qasimii strain NBRC 106168 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 6931 37 100.0 37 ..................................... ATAGCGTGGTCGTTCACGATACGACTATAAGTTTGAA 7005 37 100.0 36 ..................................... ATGTAAAATCTTTGTCAGGACAGCCGAATGTTTAAT 7078 37 100.0 34 ..................................... TCATTTCTTGTGTTTACCTCGACCATTTGAAGGG 7149 37 97.3 0 ..................C.................. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 GTCAGAGAGCAGCATCCATTACAACAAGGATTAAGAC # Left flank : TCAAAAGATCCCTGGCGGAAACTATTCTGTAATCATCCAGTATAAAAACAAGAAAGACAAGCTACTGACCACGGAAAAGGGAATGATTACGGTCATTGAATAGTGATGAGATAAATGTATGAACTTAATAGAATAAAGCGATTTAATCTTTCCTGAACGAACCTGGATAACATCCCAGCTGGTTCCTGAACAGAAATGTATAACCTTCTAGCCACTTCCTGAGCGGAGTCTGAGTATTTCCCGAGCCGGTTCTTGAGCGGAGCCGAAGGATTAGGCATTGCGTGCTCGTCACCCTTTGGCTTCGGCTCCGCTCGGCCGCCGGAATTTTGGTTCTTCCAGAAATTAATGTAGCACTGATTCAAATTTGGATTAGTATTAAAAAGCCACTAGATTTACTAGTGAGGAATTCAGAGGAGAGTGTTTATGAAGGCAAAAACAGGTGGGAATCTAGCTAGAGAAATGGGTAACAAAAGGAATTTCAGCCGATTACAGATTCAGCA # Right flank : ACCTCTGCAAAGTCAAGAGCTTGACCAGCTCCTAATGTCAGAGAGCAGCATCCAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGCAGCATCCATTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 801-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYV01000039.1 Cyclobacterium qasimii strain NBRC 106168 sequence39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 800 37 100.0 37 ..................................... ATCTTACTTCAGTGTCTCTAAGTACAGTAAGCCCGAA 726 37 100.0 34 ..................................... CATAACTAGAATCCTTTTTGATCTTGGCCCGAAC 655 37 100.0 39 ..................................... AATCAACCCCTTTTTGTTTAATGTTTTATGAAATAACAT 579 37 100.0 36 ..................................... CTATATCTGGATCCATTTTGAATCCTGTTACCAATC 506 37 100.0 38 ..................................... AATAGAGTCGGTTGACCGTATTGAAATATCTTGTCTCC 431 37 100.0 38 ..................................... TCCAGGGTTTGATTTGTTAATAGACTCTTCTGGCCAGT 356 37 100.0 37 ..................................... AAAATAACGAACTGTTTTAACTACTAGTTTACGAGAT 282 37 100.0 37 ..................................... CTTTCTAACTTTAAAGTGTCAGACACTTTGTTCCATA 208 37 89.2 36 ........TGT.......T.................. CATTGAATTTGTACCTGAAACCCCTATTGATATAGG 135 37 75.7 0 .........GT.......T...........GG.CCGA | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 96.5 37 GTCCGAGAGACACATCCACTACAACAAGGATTAAGAC # Left flank : GAATCCCAATAAGGAAACAATCAAATTAATTACAAGAAGCCTACAACTTCAGACCGGACAAGCTTATGAAATAGTAGGACAACAAGCTCCCAATGGGTGGATTTTCGTACACCAAGCCAAGAAGTTCGAAGACGATAGATTATTCAGTAATTGGATAATAACCAAATCAGGGAAATTCACCATGCACCCTAGCAAACAATTTGGCTTTGTAAAAGATATATTTATTCCTCCCTCTTTATTAATAGAATTTTGTATAGAGGATGGGGTACTGGTCAGGGTTAAGGCGATTCAATCCTTTGATAAGAAAAAAGAAAAGTGGGGATGGCAAGGCTATTCAATAACTCTAATTAAACACTAAATCAAATTTGCATAATCAATAAAAAGCCTCTAGATTTAGAACAAGGGAATCAGAAAAGAGCGTTTATGAAGGCTAAAACAGGGAGAAATCCAACAACACAAGGACATAACCAAAACTTAGTCAATTACTTATGGAATCAGCA # Right flank : AGCGTGAAGAAAAGTGCCAGCGGAGGCACTTTTTAGTGAGGGGCCAGGAGGCGGGTGGGTCTATTATAGCTATAGGTATTATATATCAAAGAAAATCCA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAGAGACACATCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 545-2499 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYV01000046.1 Cyclobacterium qasimii strain NBRC 106168 sequence46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 545 37 100.0 37 ..................................... CTTATTGTTGTCCGTCAAGGAGTAGAAATAGAGTGTG 619 37 100.0 36 ..................................... AGTTTCCTTCACTGTCATAGGGACGATATTTACTTC 692 37 100.0 35 ..................................... CAACCAATAGATCCGGAACACATAGTTCTGCTAAT 764 37 100.0 38 ..................................... GGCATTAGCCTCTGCTCCAATAAGCCTTTGTAGGCACC 839 37 100.0 34 ..................................... GAAAGCACATCGGCTATTCGTGCTTTCACATACC 910 37 100.0 37 ..................................... CTTGATAAGTTCGTGGCTATCGGCGTTACCGGGACTT 984 37 100.0 37 ..................................... AGGTTCCCCCATTACCATTAGGTGAGTCACCTTCTTG 1058 37 100.0 36 ..................................... CCGCCATAGCAACTCTTTGAAGATCACACTGTTCTC 1131 37 100.0 37 ..................................... ATTAGCAATCTGCAATGGCTGGAAGATTCTTGGTGGC 1205 37 100.0 38 ..................................... AGTACGTGTTAATTTATTATTAAACATATCGTGAAAAA 1280 37 100.0 37 ..................................... GTCGCAGTTTGTGGCTTAAGCCTTAGATTACCCGGTT 1354 37 100.0 36 ..................................... CCAGGGCTCTTAACGTAAGCATCATTTGCCCTACAT 1427 37 100.0 38 ..................................... AACTGAGGCAAAGTAAGCTTTGCAAACTTGCTTTCTTG 1502 37 100.0 36 ..................................... CGGATCTTCGAAATCCGTCTCTGCATTTTGCAGATA 1575 37 100.0 39 ..................................... AGCAAATATATTCTATCCTTAGGCTCCTGTGCCTTCAGA 1651 37 100.0 36 ..................................... TCGTTTTCATCAGAGCATGCAGACAAAAATTCAGCG 1724 37 100.0 37 ..................................... CCCAACATAACTGCTTTATCATAAAGTTGTTTACTAT 1798 37 100.0 36 ..................................... AACTCTATCAAGTACTCAATGAACTTGCATGTCTCT 1871 37 97.3 37 ............A........................ TAGATTGATGGAGTACTGGATGCGTGTCAGATAAGAA 1946 37 100.0 37 ..................................... CATGATTATAATCACCCTGAGATCTTCATTTCTGCCA 2020 37 100.0 37 ..................................... GGTATATAGAATCACCCAATGTCTTAGAGGTCATATA 2094 37 100.0 37 ..................................... GTCATCCTCGTCGCTCATATCGACTGTTATTGGCTCA 2168 37 97.3 37 ............................C........ TGATGATCAGGCTCCTCAAAGGATTCTTTCTCATTAA 2242 37 97.3 38 ..................T.................. CATTTAGGAGGAATTACATCTGAGCTATGAAAGATATT 2317 37 89.2 35 .........ATA......T.................. GGTCTTACCTTATATCGATAGATCACGCTTGAAGG 2389 37 89.2 37 .........ATA......T.................. TCCAGTAACCTGGTCGGTAAACTCCCTTTGTGTTGTT 2463 37 89.2 0 .........ATA......T.................. | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 98.5 37 GTCAGAGAGCAGCATCCACTACAACAAGGATTAAGAC # Left flank : TTTCCTCCTTCGTCCGAGAGACATCCCGATGCGATACACTTTCGGGATACAACAAGGAGGAACGAGCGGGAAGAAAAGTGCCAATAAAGGCACTTTTTAGCGAGGGGCCTGATTGCGGGGAGTTCCGGAGTAATTATCGCAATTCCTATCAAAAAACATGAATCATATAGTAGGTAGAATCGGGCAAATTTCGATAGATCATATCATCCTAGCCGGATCCTGAGCATGAGGTGTGGCAAACATTCCAAACCGGTTCCTGAGCGGAGCCGAGTAGGCATTTCGTACTCGTCACCCTATGGCTTCGGCTCCGCTCTGCCGCCGGGATTTTCATTCTTCCAAAAATTAATGTAGCACTGATTCAAATTTGGATTAGTATTAAAAAGCCACTAGATTTACTAGCGAGGAATTCAGAAGAGAGTGTTTATGAAGGCAAAAACAGGGGAAAATTTAGCTAAAGAAGAGGATAACAAAAAGAATTTCAACCGATTACAGATTCAGCA # Right flank : CCTTTGCAGGTCGCACTGCTCTCCTTTACCTATAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGAGCAGCATCCACTACAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //