Array 1 581386-582010 **** Predicted by CRISPRDetect 2.4 *** >NC_011134.1 Streptococcus equi subsp. zooepidemicus MGCS10565, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 581386 26 100.0 41 .......................... AAAAAATCAACTAGCCACTGGTTTCCTTTACGAACGTCTCG 581453 26 100.0 41 .......................... TCTTGTCTAATATCGTTAATAAACTGATGTCCGTAGTCTCG 581520 26 100.0 40 .......................... TTTTTTGACATTTTTTTGATAAGCTACAGCGATTGTCTCG 581586 26 100.0 41 .......................... GACTGTTACCCTAATAATTTTTTTAGTTGTGGTTGGTCTCG 581653 26 100.0 39 .......................... ATCTTTGTGATCAGTCACTAGTAAGATCGTTAAGTCTCG 581718 26 96.2 41 ...T...................... TAGTCAGTCTCCGCTAAGGCAGGAGACAAGCCCAGGTCTCG 581785 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 581851 26 100.0 41 .......................... CACATATAGCGGAACAATCGGACGCTATCATGGAGGTCTCG 581918 26 100.0 41 .......................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 581985 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================= ================== 10 26 98.5 41 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1367187-1366029 **** Predicted by CRISPRDetect 2.4 *** >NC_011134.1 Streptococcus equi subsp. zooepidemicus MGCS10565, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1367186 36 100.0 30 .................................... TGGTAGCTTTCCCAGCGTTGCCTATCTCGT 1367120 36 100.0 30 .................................... TAAATCATCTTGTATACTGCTACTTATCTC 1367054 36 100.0 30 .................................... ACTTGATGACATCTCTGTAAACCTTGATGA 1366988 36 100.0 30 .................................... TCATTGTCGAAATAAGCTAACTCTACATTA 1366922 36 100.0 30 .................................... TGTAGAGGCTACAGCTACCCTTTACGCAAT 1366856 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 1366790 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 1366724 36 100.0 30 .................................... TGTAGAGGCTACAGCTACCCTTTACGCAAT 1366658 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 1366592 36 100.0 30 .................................... TAACATATTATCAAATTAAAAGTGCAAATT 1366526 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1366460 36 100.0 30 .................................... AGCTATCAGACAGTGGAAAGATGATGGTAA 1366394 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 1366328 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1366262 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 1366196 36 100.0 30 .................................... TCGTTTCACATTCAAGTAAGTGTGCCCGAT 1366130 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 1366064 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.1 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //