Array 1 133762-132023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPX010000002.1 Pseudomonas aeruginosa strain PAL1.28 NODE_2_length_435391_cov_22.9518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 133761 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 133700 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 133639 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 133577 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 133516 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 133455 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 133394 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 133333 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 133272 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 133211 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 133150 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 133089 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 133028 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 132967 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 132906 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 132845 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 132784 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 132722 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 132661 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 132600 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 132539 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 132478 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 132417 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 132356 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 132295 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 132234 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 132173 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 132112 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 132051 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 144061-142934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEPX010000002.1 Pseudomonas aeruginosa strain PAL1.28 NODE_2_length_435391_cov_22.9518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144060 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 143999 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 143938 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 143877 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 143816 29 100.0 32 ............................. TGGGAGAACGACGGCAGGGTCACCCAGGAGCA 143755 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 143694 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 143633 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 143572 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 143511 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 143450 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 143389 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 143328 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 143267 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 143206 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 143145 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 143084 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 143023 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 142962 28 79.3 0 A..........A..C.....-..A....T | C [142953] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //