Array 1 20-583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000001.1 Neisseria cinerea strain CCUG 2156 NODE_1_length_269686_cov_153.484269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... TATTTTTGTTGCACGAGATGTCGATTTTTC 86 36 100.0 30 .................................... CTGCCACCACTTTATCGTGGTGTGCTTTAT 152 36 100.0 30 .................................... ACAAGCCGATTGGATTCCCATCATGAGCAA 218 36 100.0 30 .................................... ATATGGTAATGGGCGCCGACCAAATCGCGA 284 36 100.0 30 .................................... GCCAACAAGGTGAACAATGCAACAATCAAT 350 36 100.0 30 .................................... AAGCCTGAGCAGAGCATTTTTTTGATTGCA 416 36 100.0 30 .................................... TGCGCCAAAGCATACTTGTCTAAGTTTGGT 482 36 100.0 30 .................................... AAGCCGAAGAAGTAAAAGTTCACATTTTGA 548 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CTGTAATCTCGAATGTTAAG # Right flank : TACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCACCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCAGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGATCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAATTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGGAATGAAGAAACCATTTTGTCGATGGCGGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 282-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000010.1 Neisseria cinerea strain CCUG 2156 NODE_10_length_98619_cov_145.067642, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 281 36 100.0 32 .................................... ACCACTCACGGGCGTCCACTTCCTTGAGCCGC 213 36 100.0 33 .................................... CGCGCAGGTCGTATGTACCTGCGTTCGGGTCTG 144 36 100.0 34 .................................... TCTTCAGATACGAACTCAACGGTAAATTTGTTGT 74 36 100.0 0 .................................... | C [57] ========== ====== ====== ====== ==================================== ================================== ================== 4 36 100.0 33 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : TCATAAAAACCAACTGACCTTTTGCGAACTCAAATCCGATTTAGATCTTGAAAAAAACAAACTGACAGACCCGCTGAAGCAGCTCCTCGACCAAAGCCACAACCTCGGCAAAGTCCGCCGCGCCCTGATTTTATCGCCGAAAATCAAAGAAAAATGCCAAGCACAAACAAGCGGAAAAGAAAAATGGATGGCATTTGAACGCAGTTGTACCGACAAAAAAATCCAGATTATCATCGCCGAAAACAAAGAAGCCCTCAAAATACTGACCCCTTGACAAGCAAACATCAAATGCCGTCTGAACCGTAAAAACCGTTGTCGAATGCAAAACAGACGGCTATAATCCGCAACACAAGTTTTCCGGCGGACGGCTTGAAGCCCGTTTTCCGGCTGCTCTTTAAGTTAAAATTCCGTTAAACAATGTTTTTGATGGTTAAGAAAATTTTTAACTATTTTTAACACTGCAGATGTTTGAAAACATTAAGGTTTTTTGACGAGATGCA # Right flank : CATTTACCCACCTATGTATCGTCGCAGGGGATTGTCGG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 228101-228466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000003.1 Neisseria cinerea strain CCUG 2156 NODE_3_length_228514_cov_161.302067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 228101 36 100.0 30 .................................... CCAACGTTGAGTAGCGTGGTTGCGTCAGCA 228167 36 100.0 30 .................................... TATGCGACCATGGCGGGCATAAACAACACG 228233 36 100.0 30 .................................... GGCAGCGGCGACATTACGGAAGTCGCCAAC 228299 36 100.0 30 .................................... TCCCCAAAACATAGCTGCCCTTTCTTTTTT 228365 36 100.0 30 .................................... TGTGTCGGTTATTTTGTGACATAATTGTTC 228431 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AACGGGGCAGCGATTGCAAACGCAGGGAAGAACGCGACATGGCAGGACTGTCCGAACGCATGGCGGCAGAGTTAGACAGGCACGGGGCCGCCGTATTTTTCCGGGAATATCCGAATGCCAACCACGGCAATGTCCCGTTTCACTCGCTGACCGACTGCGTTGAATATTTGAGGAAGGCTTGGCAGAGGTAGGGAATCAGGGGTGGGCATAAAAGGCTTATCGCAAGATTGGAAGCCAAGGAGACCAAAAAAGCCGTCATCGCCGCATTGATGCGTAGGCTTGTCGGTACGTACCACATAGACAAGAAAATCGAAGATGACGGCTTATCGTGTTGTAAACCAGCGTAAATCCCGATAAGAAAAAAGGCATTTCTTTTGAAACGCCCGCCTTGCCGCGTGTAAAATCCTTTCAATTGTAAGGATTATGTTATTCGATTAAAGGAGTATCTTTTCCATTTCGCAGTGCTACAATCTGCCCCCCTAGATTGCTGGACTTGACCC # Right flank : CACAGGAACGCTCACAGACGCGTTTAGCTTGTTGTAGCTCCCATTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 114512-114891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000005.1 Neisseria cinerea strain CCUG 2156 NODE_5_length_130215_cov_163.721935, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================ ================== 114512 37 94.6 31 C..............T..................... GCATTAATAATCTTATTAATACCAATAGTAA 114580 37 100.0 31 ..................................... GGCAAAGACCTACCTTTAGGTAGGCTGAATT 114648 37 100.0 32 ..................................... ATCTTGGGCTTCCTCCCAGTCGAAGTTACCCG 114717 37 100.0 32 ..................................... TCAAATCCTTCAACATCGAAAGCTTAGCGACA 114786 37 100.0 32 ..................................... GCAACAATAGTGATGATATGACGGATTTTCAT 114855 37 81.1 0 G..................T...........A.AAGT | ========== ====== ====== ====== ===================================== ================================ ================== 6 37 96.0 32 TGTCGGAAAACTTGCCCCACAAATCGGGGATTACGAC # Left flank : CCGTCCGCAGCCTCAAACCCGGCCAAGTCAGCGCGCCCGTACGCACCCAGTTCGGCTGGCACATCATCAAGCTGAACGAAGTACGCGAGGCCGGCACGCCTCAGGAACGCGTCCGCAACGCCGTGCGCCAGTATATTTTCCAACAGAAAGCGGAGCGTGCGACCGCCGACCTGTTGCGCGACCTGCATTCCGGTGCCTACGTGGACATCCGCTGAAACGGTCGGGACTGAAAAGCCGTGCCGTCCCGACAACCTTCGGGCGGCACGGCTTTTTCAAACTGCGGCGGCAGACGGGCAGACGAAGCGGCAGAACATATTGAGAAAAATACACAAACGCCGTATAATCCGCCGTACAAGTTTTCCGGCGGACGGTGAAAAACCCGTTTTCCGGCTGCTCTTTAAGTTAATATTCCGTTAAACAATGTTTTTGATTGTTAAGAAAAAATTTAACCTTTTTTAACTTTTAAGCATTTGAAAATAATGGAATTTTCTAACGGGATG # Right flank : TAAAAACGGACGGCATATTTGCCGTCCGTTTTTTGTTGCCGGAGTTTGCCGTATCGGGGTTCAGACGGCATTGCCTGCCGTTGTACCCGCGGGTGCGACTGCCTTGATGTAGTTGAGTGAGACAAACTGCTTCTCGGCATCCAATTCGGTGATTTTGAACAATGCCTGCGATTTGGGCAGCGCGTCAAACGGAATACCGGTCGCGCGCGTGACCAGCGGCAGGCCTTCGATGCGGACGAGGTCTTCTTTGAGGATGGTGGCCGTCAGCTCGCTCGTGCCTTGCTGTTGCAGGTACACGAGGCTCCAGTAGGCTTCCATTTGGCGTTGGAAGTCGGCGTAGGCTGTATAGGCGGCATCGAAGTCGCGCAACGCTGCGAAAAGCTCGGCATCGCTGTTTTGATACAGCGGCTCGGCAGAATCGTCGATCAGGCTGATCAGCTGCTTTTGGTTGATGTAGTCGGCGGCGCGGCGCAGCGGCGAGGTAAACCAGCCGTAATGTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGGAAAACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 7264-7508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000015.1 Neisseria cinerea strain CCUG 2156 NODE_15_length_7550_cov_146.678185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 7264 36 100.0 32 .................................... GATTTCCTCTAAGCCATCAACATGGTTGTTAT 7332 36 100.0 35 .................................... CAGCTTATCAACCTCTACCGCGTCGTTCAGCATCA 7403 36 100.0 34 .................................... TACGAATATGAGCAGAATATGCAAATTGTTCTTT 7473 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 100.0 34 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : ATGGCAAGAAAGAATGGAGGAGCAACCAAACAAGGTCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCCTGCAAACCGCTGCAGAAAGCTCCGATTTGAGCGCGGAGCAGAAAGCCGAAATCGCCGTTACGTTTGCCGTCAAAAAGATGATGGCAAAATACGCGAAATGGCTGACTGACAAGCGCGGCAAAGACCTGAAACCCATCTTGGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAGCCCGAGCTTTTCAGACGGCATAAAGTCGCAAAACGGTTAAAAACCGTTGTCGAATGCAAAGCAGACGGCTATAATCCGCAACACAAGTTTTCCGGCGGACGGCTTAAAGCCCGTTTTCCGGCTGCTCTTTAAGTTAAGATTCCGTTAAACAATGTTTTTGATAGTTAAGAAAATTTTTAACCGTTTTTAACATTGCAGATGTTTGAAAACATTACGGTTTTTTGACGAGGCGCA # Right flank : AATGCGGCCTTTGCCAAACCAGCCATCTTCAAGGGTCGGAAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 3755-3232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNBX010000017.1 Neisseria cinerea strain CCUG 2156 NODE_17_length_3819_cov_126.458023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3754 36 100.0 34 .................................... CTCGGGCATCCTGAGCATCTTTCATAGCCATGAA 3684 36 100.0 35 .................................... TTTAGAAGTGTCTTTGGTAACGGTTCAAAGGTGGG 3613 36 97.2 33 ..................T................. TGTTCAAAATCTACCGTCCAACGACGTTGCCAG 3544 36 100.0 33 .................................... GGTTTGACATACCCTCGAAACGCACTTGCCGGA 3475 36 97.2 32 .......................T............ TCTGCCTGCAAGAATCCTACGTTGGACTTCAT 3407 36 100.0 33 .................................... GGGTAGCGCGTATGCACCACAAATTCGTCATTC 3338 36 97.2 34 .......................T............ TGTGGCAACCTGCCTGTCAAGGCGTTGGTAGCGA T [3331] 3267 36 91.7 0 ............................C..CA... | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 97.9 34 GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Left flank : AGACTTGCCCCACAAATCGGGGATTACGACATGTCGGTACGCAACCATTTGGTTGCTTTGGTGG # Right flank : GGCATGAAGCGGCGCGGTTCGGATATGTCCCCTTCGGCTTCCGTGTCCGTATCAAATAAAAACAGCCTTGAGGTTTGTCCCTCAAGGCTGTTTTTTGTTTTCGGTTTCGGAAAAATCAAATGCCGGTGTCGCCCAATATGATGCCGTCCGGCAATGTGGTTTTTCCGAGCGTGCGGATGATGCTGCCGTTGGGCAGGGGATAGAAGCGCAGGTCGTCTTGTTTGGCATCGAGCATTTTGCATAATGTGTCAAAGCAATTCCGGGCTTCGGCGCGGCTGCCGATGTGCAGGAATACGCTGTTTTGCAGCGGGACGGCCTGCTGTGCAAGGTATCGGTGTGCTTTTTGCAGGCGGTGCGGATCGGCGATGTCGTAGGCTATGAGGTGGCGCATGTTTATTCCCAAACCTTGAGCGCGCCCAATCGGATTTCGGGCTGACCACTATATTCGGCGAGGTTTGCCAAATGACCGGCGCAAAGTTGGTGGATTTGGCCACGCCATG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACAAATCGGGGATTACGAC # Alternate repeat : GTCGGAAGACTTGCCCCACAAATTGGGGATTACGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //