Array 1 350115-349469 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 350114 36 100.0 41 .................................... CTTGAGGGGGAGGTTAGACTACTTGGTCACTGGGATGAAAA 350037 36 100.0 37 .................................... TGTATTGTGCAGTCCCGAATATACTCGTCGAAGTCCG 349964 36 100.0 38 .................................... ACCTGCAAAACCTACCATAGCATCGTTGTTAATTAGAT 349890 36 100.0 43 .................................... GAGAACATGTTCTCCACCAGCTTTTCGGTGCTCTTTGGAAAAG 349811 36 100.0 41 .................................... ATGCGAACATAGAATCCTCCATTTGGCAGGGAATGACTAGA 349734 36 97.2 37 ............................C....... AACTTAGACCGTCCGCCTTCGAACACTAAGACATCTA 349661 36 100.0 36 .................................... ATCAACCACTGACTAGCGTACGGAACTACAATCATG 349589 36 100.0 50 .................................... GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA 349503 35 77.8 0 ...........C..............T.G-..TGTA | ========== ====== ====== ====== ==================================== ================================================== ================== 9 36 97.2 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GGCTGCTGTTCGAGGCTGGCCTCAACGATTGCTATCTGTTTGCGCAATTAAAAGATGAAAAGCTGCGGGCGGAGGCAGAAGGCTTTGCCCAGCGACAACGCCAAGCCCAAGGGATCCATTTCCTTGCCATCCAGAGCGATTTCCGGGCCCAGTCCTTCGCCGGCTTTTGGCTGATGCAGTACCCTCTCTAGAACAGTTGTCGGCCTGTCTGCCCCGCCACTCGCTCCGCCCCAGTTGCCTGGGCAGCCCGCAAACCCTTGCGTGAATCCTCAGGCTAGCTATGTTTGCGAGGCAACACAAAAATGGTATCAACGCCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCTGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCACCTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : GGTTGGCCAAGTAAGCGGCTCCCTCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAAAGCT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 903356-903886 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 903356 29 100.0 33 ............................. ACAAATACAGCCAGCTGGTGCGTCATTTGCCGA 903418 29 96.6 34 ............................A GGCGTTGCGCCAAGGTTCACCTATTCCCCGGAGA 903481 29 100.0 34 ............................. GCCACCCGTCGCACCGCGTCGGCCAGGTTGGGCA 903544 29 100.0 34 ............................. GTGGTGCTGGTGCGCCCCGCCGGCTCCAGTTTGG 903607 29 100.0 34 ............................. CCAGTAAGAGATTCACGATGGAAGTGAACAACCC 903670 29 100.0 34 ............................. CCGCCGGACGCGCCAGATGAGCCGCCAGCAGAGC 903733 29 100.0 34 ............................. CGCTCAATCTGCTCACAAATCTCCAGTGCTGAGA 903796 29 96.6 34 ............................A ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTAC 903859 28 82.8 0 ............T.T.....A..-.G... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 97.3 34 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : CGGTTCGAGCGGATATTAGTTTCTTGAAGGATCGCTTTCAAGCCCCCATCAAAGTCAGCCGTGAAAAAGGGTATCACTACACTGATCGGGAATGGCGCTTGCCGACGATACCCCTCACTAAGGGGGAGCTGTTTGCCCTGACTTTGGGAGGGAGAATGCTGGAAGCCTACGCCGGATCGGCCTATGCCCCGCAGTTGCGCTCGGCAATTGGGCGGTTGGCGCAACGGCTTCCAGAGCAGGAGTGGCTGGATCTCCAGCAGCTAGCCGATGAGCGGCTCATCTTTCGGGCAGGGGCAGAAACCCATCTGGATTGGGAGATTTGGCAGCGGTTGGAGGATGCCTGTCGGGAGAAAAGACGAGTGTGGATGCGCTATCGCACCGCCAGCCGAGGCGATCAAGTGTCGGAACGGGAGTTGGATCCCTATCTCTTGCACATCTACCGCGGCACCAATCCCTACGTGATTGGCTGGTGCCACAAAAGACAAGAAGTGCGCTGGTTC # Right flank : GGCTAGACAATTAAGACAATCTCACATCTACCGGGATCCCTTGCCTAGGTGGGCGACACTGGGGCTAGGTCGCAGAAGCGCGATATCTAAGGAGGGGAGTATGAGCAGGAGCTTGCTGGAGCAGTTGCGAGAGATGACGGTGGTGGTGGCCGACACGGGGGATATCAACGCCATCGAGACCTTTAAGCCGCAGGATGCCACCACCAATCCCTCTTTGATTACAGCAGCCGCCCAAATGCCCCAGTACCAGGGCATTGTCGATGAGACCTTGCTCAAGGCCCGCCAAGACCTGGGATCCAAAGCCGACACCAAAGCCGTGGTGGCCCACGCCATCGACCAACTGGCGGTGGCCTTTGGCGTGCGCATTTTGTCCATCATCCCCGGTCGGGTTTCGACGGAGGTGGACGCCCGGCTCTCCTACGACACAGCAGCCACCGTGGCCAAGGCCCGCCATCTCATCGAGCTCTACAAGGCGGCAGGGGCGGATCCCAAGCGGGTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1992823-1993239 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 1992823 36 100.0 41 .................................... ACTAACGTAGGGACACGGCTCTTCTTGCAACGGAATATTTC 1992900 36 100.0 37 .................................... TTGCGTTTCCGCAGAGCCTCTGCCCTTAGCCAAGTAC 1992973 36 100.0 35 .................................... GAGGAGAAGCCTGCCGACAAGGCTTCTCCTTCCGA 1993044 36 97.2 49 .........................G.......... TTTGGAAACTCCCCCTGCTGTGTTCCAGGGATGATCTGGATCCCCTGAA 1993129 36 88.9 39 ...AT......A.A...................... CGCTCCCGGCATTCCGAGAGCGGCAAAGGTTTTAGCAGT 1993204 36 75.0 0 ...TT...............TTG....G.CA....G | ========== ====== ====== ====== ==================================== ================================================= ================== 6 36 93.5 40 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATTAA # Right flank : GAAAAAACTAGCCCTTGATACACAGAATGGGTCTTAGGCGCGCTACGAGTTTCGCGATCTTGGCTTGGTCGGCAGCGCGCACAACTTTATCTACGTTTTTGTAGGCCTGGGGCGCTTCTTCGGCTACCCCCCGCAAAGAAGGGCTGCGGACGATGACGCCGCGCCGCCTCAGTTGTTCGACGATCTCCTGCCCTGTCCAGGCTTTGAGAGCTTGGTTGCGACTCATCGCCCTTCCGGCGCCGTGGCAGGCCGAGGAGAGGGAAAGGGCCTCACTTTGCTCCGTGCCGACCAGAATGTAGGAGGCCGTGCCCATGGAGCCGCCGATGATGACCGGCTGACCGATAGAGCGGAAAGCCTGAGGGATCTCTGGGTGGCCAGGCCCAAAAGCGCGCGTTGCCCCCTTGCGGTGGACGAACAGGCGACGTTTTTTCCCCTCTATCACGTGCGTCTCCTCCTTACAGGTGTTGTGGGAGACGTCGTAGATAAGGTCGAGTTCAGCC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 2236276-2236612 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2236276 37 100.0 41 ..................................... ACGAGTGTTACCGTGCTCTGATGGAAGAAAACTAACCTAGT 2236354 37 97.3 39 C.................................... GTGACTATGATGGGGATCGCGTGAGCGTCTCCCTGTCTA 2236430 37 100.0 35 ..................................... GCCCACCATAGCATGGGCACTCCGTCTACGATAGC 2236502 37 100.0 37 ..................................... CATACAACCCTCCCTTTTCAGGGTAGAAACAACACCC 2236576 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 99.5 38 AGTTCCCCCTTCGGGGGGATCCCTGGAAATTGGAAAC # Left flank : GAGGCGCATCTCCCCGTATTTGCGATATAGGTCTTTGGTGACTTTGTAGGAGCCGCCGTAGTGGCCCACATCCTCTCCCAGAACAAACACATTGGGATCCCTGGCCATCTCTTCGTCGAGGGCGGCACGCAAGGCATTGTAAAGGAAGGTCTCGGCCATAGAGGGCAACCGCTGCTCAAAAATGTTGCTAAGTTTCCATTAAACCATTTTGCCGGCAGGGATCCGCTGGCAGACAACCCGCTGGGCAGGGCACCTCGCCCCTAGGGATCCCAACCCCGGTCATGTTGCCAAAAGCACACCAAAACGGTATCAGCAGCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCGTTTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCCGCTTGGGTTTAATAAGGGTAG # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTCCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCCCCCTTCGGGGGGATCCCTGGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 5 2237106-2237440 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2237106 36 100.0 40 .................................... TACAAGGAAGCGCTGTTGAGTCCCAGCCCCAGGAACCGAA 2237182 36 100.0 39 .................................... GATATCCCCCTGACCCCCTTACCCCCGCTTTCCCATCGT 2237257 36 100.0 38 .................................... TTCTCCAGCCGCTTATTCTGGAACCACGTAACTCCATT 2237331 36 100.0 38 .................................... GCCCAACAGCTCTTCCTTGATAAATCCTTCTCTAATAG 2237405 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 98.3 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : TGGAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : AGAAATAGAAAATGAGCTTGCTGCTGCCGAAGCTAGCCCTGACATTGGGAGATCCGGCGGGGATTGGGCCAGAGATTGTGCTCAAGGCGCTGGCGGATCCCCAGGTGCAGGCCTGCGCCCAGATAACGGTGGTGGGCGAGCGGCAGGTTTTGGAAGCTACCTACTGCCTTCTGCGCCAGCGAGGGGCAACCGACCTGGCCGACCCGGCAGGGATCCCGGTGCTGGAGGGCGGCAGCGGCTTCTACCTAGAGCCGTCGCGCGTGGGCCGGGGGGATGTCGCAAGCGGGGCGGCCAGCTTTGCCTACCTGAAAACAGCTATTGAAGAAGCGCTGCGGGGCCAGTTCCAGGGGATCGTGACCGCTCCCATTGCCAAATACCTCTGGCACCAGGCGGGCTACCCCTTCCCTGGCCAAACAGAAGTTCTGGCCCAGCTCAGCGGGAGCGAGCGCTACGGCATGCTGTTTGTGGCCCGTTCTCCCCACAGCGGCTGGCAGATCCGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 2633892-2634076 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 2633892 38 100.0 36 ...................................... CGGATGACCCCACCATCCAGTGTGAAGTAGAAGGCG 2633966 38 100.0 35 ...................................... TGTTCCTCCTTTCCCCAGCAGGGGGCACTGGTCAA 2634039 38 94.7 0 ..............A.....................A. | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 98.2 36 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACCT # Right flank : AAAGAAAACCTGCTACCCAGTGAGTAGCGGGTTAGTGGCTCTCCCTTCAGGGAATCTCCAGAAATTAGGAAGGCGGCTAAGGAACTCCGAGTAGATCTCGGTATAGGCCTTGACCCACTCGGGATCGGGCTGGATGAGGCGTTCCACCTGCACCAGCCGATCGGCAGCCTGCTGCACCGAGCAGCACCAATAGGCCGAGGCGGCCAGGACAGCTGCCCCTACGGCGGCCTCGGGGTGCTTGACCACTGCTAAGGGGCGGGCAAGGAGGCTGGCGCGCAGGCGCAGCCACAGAGGGCTTTTGCAGCCGCCGCCGGTGGTCAACAGCGTTCCCTCTATGGGGATCCCGTGGGCGGCCAAGGTCTCCAGCCCCAGCCGCTCCACCATTGCCACCCCTTCCAAGAGAGCTGCATAGAAGCGAGGGGATCCCACTTCCGCCTGGGGCAAGAAGCCGGCAAATTCACTATCCAGGATGGGAAAACGCTCGCCGGGTCGGCAGAGGG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 2738269-2737555 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2738268 36 100.0 40 .................................... TCCAGAGCCCCAAACCTGGGGGTACCCAGATTAAGTATTC 2738192 36 100.0 35 .................................... TTCAAGCTCTCGGTGTGAACCTCGAGCTCCCCGGA 2738121 36 100.0 37 .................................... GCAGCTAGCCCCGATAGTCCCATTCCTCCAGTGCAGT 2738048 36 100.0 42 .................................... AATTGTTGTTCTAACCCAACCGCAGCCTTGTTTATCAAGACT 2737970 36 100.0 37 .................................... AACCATAGGCCCCGGGGTGTATACTCAACGAAGTCCC 2737897 36 97.2 41 ..............A..................... CAGTACCACAGCATACCTTTGTTAGTGTAGGCATATGGATG 2737820 36 100.0 39 .................................... CAGTAAATTTCTTCGCCGTCGAAGTACGGCTCGAACACG 2737745 36 100.0 40 .................................... CCCGCCTCGGGTGGAGACTTCCACCACGTAAAACGTCTGG 2737669 36 94.4 43 ..........T.T....................... GACCTCCGAAACAACACATCACTGGGCAAAGCCCAGCATGAAA 2737590 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== =========================================== ================== 10 36 98.9 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AACCGCCAGGTGCTCCCAAACTTCACGCGCCTGTGCAGCAGCCACAATCGGGCAGTGCTGTACGCGCTAGAAGACTTCGGGCTCAAGTATGACGCCGTCCAGGCCCACAACCCTATCGAAAGCAGCATCAAAGCTTAGGCGGAGGATTGGGCCTCCCAGCGGTCAAAGATCTGCAGCAGCAACTGCACCCCATCGGTCAAGGCAGCCGGACCGGGCTGCAGAATCACCTCTGACGGCAGCTCGTAGACGTGTCCGCTCCAGACCGCCGGGATAGTCTCCCACCCAGGGCGGCTGTGAAGCCGCTCAGGCTTGAACCTCTTGCCACACCAGGACACCAGGATGATGTCTGGAGCGCGCCGCACGACCTCTGCCGGTTCAGCTATAATCCGGCGCCGTGCATCGGGATAGGCACTGAATTCGGAAAAGATGTCTTCAGCTCCACACAAACGAATGAGTTCGCTGATCCAGCCGATGCCTGTAATCAAGGGGTCGTCCCACTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 8 2743101-2742914 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXUX01000001.1 Synechococcus sp. 63AY4M2 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2743100 37 100.0 35 ..................................... CTCCGCGCTCTATGCGCAACCGAATCAGGCTGCGC 2743028 37 100.0 41 ..................................... ATTGCCCATATTCAGTTTTTCGTTCATTGTTGTGCTCCTCA 2742950 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 38 AGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GCAATCAAGGCAGCCGCCCATTCCCCCTCCCCCTTGGCCTGGGCCACCGTCCCCAGCAGGTGCAGGGCATCGGGTTGATCGGGAAACTCCGCCAGAATTTGCGAGTAAATGGCTTCCGCTGTTCGCAAGTCGCCAGCCTGCTGGGCCTGGATCCCGGCCAGCAGCTTATCCTTGGGGGCGAGATCCGACATTGAAACAAGGGAAGCTGGAGAGTTTTCCTCACTATAGGCCCTCCAGCTCCGATTAGAACCCCCCTCGCCGCCTTCCTCTCCCTAGGTCTCATGTTGCCAAAAGCACATAAAAACGGTATCAACGCTTCTGCGATCGCCTCGCCAAAACCCGCAAAAGCCGATTTTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTGCAAGGCCTTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATAGGTCTTGCATTCCTTGCCCCGCTTGGGTTTAATAGGGGTAG # Right flank : TAGTCAGTACTCAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //