Array 1 1243451-1243951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046628.1 Streptococcus equinus strain CNU 77-23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1243451 36 100.0 30 .................................... GAATTTGAAGAAGACCATTGTTATGCCGTC 1243517 36 100.0 30 .................................... TTTAGGTACAGTCTCAATAGTAATCCAGCC 1243583 36 100.0 30 .................................... AATAAAGCAGAGTACCAAATAGATTACAGT 1243649 36 100.0 30 .................................... TCACTTTATATGGATAAGCGTGCTCTAGAT 1243715 36 100.0 31 .................................... TAAATAGGAACGGTTTTTCTATTGACTTAAA 1243782 36 100.0 31 .................................... TAAATAGGAACGGTTTTTCTATTGACTTAAA 1243849 36 100.0 31 .................................... CACCGCCATTGACATAGAAAAGGAGGCTCCA 1243916 36 83.3 0 ........................AAA...TCT... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.9 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGATAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGTTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAATTATTCTGAGGTTTTAACAAAAGCTCTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : CTAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATTGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1244559-1245919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046628.1 Streptococcus equinus strain CNU 77-23 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1244559 36 100.0 31 .................................... TGTGCAGCATTAGCTTTTGAGACAGCGCTGT 1244626 36 100.0 30 .................................... ACTGCGTAGTTCGGATAAGCAGCCATCCAT 1244692 36 100.0 31 .................................... GGTACATTCTTATATGGCGCTGAAACCTTTA 1244759 36 100.0 30 .................................... CCTTGTCTTGTAGGACCGATATGTCCTTAC 1244825 36 100.0 30 .................................... CAGGGCCAAGGTCATGAATAACCTGCAAGT 1244891 36 100.0 30 .................................... CGACTTTAGCCGTTGCCATTGTCGGAATAA 1244957 36 100.0 31 .................................... AAATCGTCTTCGTTGATATCCATAGGGCTAG 1245024 36 100.0 30 .................................... AGCGAATGCTTGACGGTTATTTAAACCTGC 1245090 36 100.0 31 .................................... TTTGTCGGAAAAAATTGAAAAAATCGATAAA 1245157 36 100.0 30 .................................... AGAAAGGCAAAACCATGAAATTTAATGAAT 1245223 36 100.0 30 .................................... AAACAGTAAATAAACGTCGAGCAATGTACG 1245289 36 100.0 30 .................................... AGCGTATTAGCGAGTTGGTTAAAACTGGTG 1245355 36 100.0 30 .................................... GCTGGGATGACGCAGGAAGAACTTGCGAAT 1245421 36 100.0 30 .................................... CTTCCTAAGTTGTTATTCGATAGTTTGATT 1245487 36 100.0 30 .................................... GTTATCATCTCGATATGGGGTGTACCCTCT 1245553 36 100.0 30 .................................... TTGAAAATCTTTCTCTTTAATGCAATATCA 1245619 36 100.0 30 .................................... GAGGTATTTCAAGACAAGAACTGCTTACAC 1245685 36 97.2 31 ....C............................... AAAATACTCGTGCATTTCCTGATAAATATGA 1245752 36 100.0 30 .................................... GTTATCATCTCGATATGGGGTGTACCCTCT 1245818 36 100.0 30 .................................... TACTATTCTTAAGTTACTTCTACGGTTGTC 1245884 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATTGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CTGTGACTACTAAATATGAATATACCAAAACCCCACCTAGTTCGTCACTGGGTGGGGTGATCTATATGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTTGCTTAAATAATAGCGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGTGATATTTATCGCGCTTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //