Array 1 180356-182818 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIDR01000005.1 Bifidobacterium breve strain 142 142_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 180356 33 100.0 34 ................................. ATATCTGCTGGGCGCATTTGTGGCCGACTGGGGG 180423 33 100.0 34 ................................. ATCGGCACGATAGGCCATGGCGGCACCGTCACCG 180490 33 100.0 34 ................................. CCTATGGCGAGATCAAGATCGGGGCACGAACCGC 180557 33 100.0 34 ................................. AACCTCAAGGCGAGCGTCGATGATGATGTCGAGC 180624 33 100.0 35 ................................. CGACGCGAATTTTTCGAGCAACAACAGCACCATCA 180692 33 100.0 34 ................................. AACAACACCGTGCGCACCATCGCGTATGTGGCCG 180759 33 100.0 35 ................................. AACATTGAACTGCCGAAACTGCGCGAGGAGCGACA 180827 33 100.0 33 ................................. CTTGTCGAACCGTCAAAAACGATGGCTGATGAA 180893 33 100.0 34 ................................. ACACAGACACATTTCCAGCCATCGTTCATCCACG 180960 33 100.0 33 ................................. GCTTCAGTGTTGACACCATTCATGACCGCACCG 181026 33 100.0 33 ................................. CGTTCGGACGCCGTCGAGTATCGCATTGGCGAT 181092 33 100.0 34 ................................. AGCAGGTTGTACGCGGTGGTGTATCGGTTGCGGT 181159 33 100.0 36 ................................. CCGTCCGTCCAGGCGAGCCGGAACGGGATGCCCCGC 181228 33 97.0 34 ...........C..................... AGCTGTGGCCACAGTCGGTTGATTTCCGTCGCCG 181295 33 97.0 34 ...........C..................... ATCGACCCGGACAGCATGACCGACATGGAGGTGG 181362 33 97.0 34 ...........C..................... TCGACCTTGTTGGACGGGGTGACGCCGTTGTTGA 181429 33 97.0 35 ...........C..................... CGCCTATTCGGGACATGGATTGATGATTCTTTGAT 181497 33 97.0 35 ...........C..................... CACGTGAGAGGTTCTACAAGCCCTCGCCGATGATG 181565 33 97.0 33 .............T................... ACGCCGGCACCAACATCACCAATCACATTGAAA 181631 33 100.0 34 ................................. CTCATCTCGGACAAAACCAGGGACAACAGCGAAC 181698 33 100.0 35 ................................. TGGTTTTCCGGATGGAGCGGATGACGGGATTCGGA 181766 33 100.0 35 ................................. ACGTGAAACAAACCGCAACCGGAGAGAGGCGGCAA 181834 33 100.0 36 ................................. CAGCGAAGCGGGCGGGGTGATGAAACGTTGGACAAA 181903 33 100.0 34 ................................. GGAGTGTCCGGTAAGAAGAGCGTGACAGTGACCG 181970 33 100.0 33 ................................. CACGAGCACGTTCTGCGGCTGGTACGTGTTAGT 182036 33 100.0 35 ................................. TCGATGATGTCGCTGATCCATGCCTGGACCTCGGC 182104 33 97.0 35 ................................A CCGTCATCACATCATCACGCCGCAACTACCCTCCG 182172 33 100.0 35 ................................. ACCCAGGCCGGCGCGACCGGCGACGTGTCCGACGC 182240 33 100.0 37 ................................. CATGTCTTGTCCACGTCCCCGAAACCGAACGACACGT 182310 33 100.0 35 ................................. ATTGAGCTTCACGGTGGCGGCATCCAGTCCTTGCG 182378 33 100.0 33 ................................. ATCTCCTCAGGAACCTACATCATCGAAATGGTG 182444 33 97.0 36 ................................G AAACGTGTGCGCGACGACAAGGCGTCCATCACCTGG 182513 33 97.0 35 ..............................T.. TTCACGAACCTGTGGAACGGCATCAGCGCCGCCGT 182581 33 100.0 35 ................................. CCGTAATATTGCGCGACGGTCCGTCCGTCACGGCT 182649 33 93.9 36 ..................G......G....... AACGTGTACCAGATCGGCACGTACACGGACCAGATC 182718 33 100.0 35 ................................. TACATGGACGACATGCTCTTGACGGGCAAAGGCAA 182786 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 37 33 98.7 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //