Array 1 2543283-2540371 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012019.1 Legionella pneumophila subsp. pneumophila strain Toronto-20052 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2543282 32 100.0 35 ................................ TTAAGTCTATAGGTTGGCTAGGTTTCATCTTTCCG 2543215 32 100.0 35 ................................ CATCTCGCGGTGATAGGCTTTAACCCAGTCCGGGT 2543148 32 100.0 35 ................................ TTTAAATCGTTTTTAATCACCTGATCATCTGTTTC 2543081 32 100.0 33 ................................ AATTAAACTGGTTTCTATGTCAAAAAACAACAG 2543016 32 100.0 35 ................................ ACTTTTAACGGCACAGCCGTAACCGGGATCACAGG 2542949 32 100.0 36 ................................ AATGCTTTCATGGTGAACGTTGCTCTTGGCAAAGGT 2542881 32 100.0 36 ................................ CCATGTGCCATTGCTATTAATGTAATCAACGATGCT 2542813 32 100.0 34 ................................ ATCGCAATGATGTTGGCAGCAGTTAAAGGGACAG 2542747 32 100.0 35 ................................ ATGTTCTTGTCAAACCACATTGCTATAGCACTTAC 2542680 32 100.0 36 ................................ AGCGTACTCCATGAAATTCGTATAGAACCAATGCAT 2542612 32 100.0 33 ................................ ATAATAATCTCACAACGTAAACCAAACTTTACT 2542547 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 2542480 32 100.0 35 ................................ ATGTATAATGATATTTGTCTGTGAGGGAAACCAAC 2542413 32 100.0 34 ................................ CGGATACTTGGTATCACTTACTGCTATAAAATGG 2542347 32 100.0 36 ................................ TAATACATTAATAATCTTGGCAGGGGCTTTTAGCGA 2542279 32 100.0 34 ................................ TTCTTAATTCGATTGCCCATTTTTCGTGTTTAGT 2542213 32 100.0 35 ................................ AATTATAAATCTAGCTTTGGATAAGGCCAAGTCGA 2542146 32 100.0 35 ................................ AATGCCACAGTAAGGGCAACATGTACGCATATAGA 2542079 32 100.0 34 ................................ ATGGCAATGATGTTGGCAGCAGTTAAAGGGACAG 2542013 32 100.0 37 ................................ CGATTGCAGCAAGCGGTTACTTCAATGCTTTCATGGT 2541944 32 100.0 34 ................................ TCAAGAAAATAGTAAATGTGATTTATATTGTAGT 2541878 32 100.0 36 ................................ TTGTTTTAGGAAGTTTGAAAGGATTGTTTACAGGTG 2541810 32 100.0 35 ................................ GAAACTGGATTGTTATTTAAAGCCCGTCCTGATGC 2541743 32 100.0 35 ................................ CTTTGTATGGCTGATCAACATGTTTCGCTGTCGTT 2541676 32 100.0 34 ................................ TTCGTAAATCTCAGGTACATTTATGTCATAGGGG 2541610 32 100.0 36 ................................ AATTACAATTAGTTAGGGATAGGACTAGATTTATTG 2541542 32 100.0 34 ................................ TTTATGGCCCGCCCAAGGTGTGGCTATAGGTCCT 2541476 32 100.0 35 ................................ TAGTTTATCAGTAACGTCTATTCTTAGTGTATGGT 2541409 32 100.0 34 ................................ TCACACCACTCACCACTATTTATATATGATTTAC 2541343 32 100.0 35 ................................ ATGGCCTAGTTGGATCAGGGAATTGCTAATAATTT 2541276 32 100.0 36 ................................ TTGTGTCTCTATGTGAATTAAGAATAGTTGTCTTAG 2541208 32 100.0 37 ................................ GGAAAATGATGATGAAATAGCTCTTGTGATAGGGCAT 2541139 32 100.0 35 ................................ ATTTTATAGGCTCAGAAAATAATGATTGGGTTGTT 2541072 32 100.0 35 ................................ AAGCAAAAACAAGGGTTACAAAAAGAAGCCTTGGA 2541005 32 100.0 35 ................................ ATCTAAAGAGAGGTAAAGTAATGACTATTGAAGAA 2540938 32 100.0 36 ................................ TTATCTAAAGCAATAAACTCTTGACGCAATGCTGTC 2540870 32 100.0 34 ................................ ATATTTCGCAAACTTATAGAATGAATGTAAAAAT 2540804 32 100.0 34 ................................ CGTCGTCTAAGACATTAAAAACTAGAGTTTTCAT 2540738 32 100.0 34 ................................ AGATAACTTAGATTTTACGCGTTTGTATTTAACT 2540672 32 100.0 37 ................................ ATAGGTATAGAAAAAGAAGAAAAATATTTCAATATAG 2540603 32 100.0 34 ................................ ATCCCAAGGTAAAATAGCTTGCACATCATCATTC 2540537 32 100.0 36 ................................ TTTGAGTTTGGTGATTAGGTCGTCAATGCCAATAGG 2540469 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 2540402 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 44 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : ACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //