Array 1 157029-155657 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUC01000004.1 Salmonella enterica strain BCW_3293 NODE_4_length_257474_cov_3.42062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 157028 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 156967 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 156906 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 156845 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 156784 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 156723 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 156662 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 156601 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 156540 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 156479 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 156418 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 156357 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 156296 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 156235 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 156174 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 156113 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 156052 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 155991 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 155930 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 155869 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 155808 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 155747 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 155686 29 100.0 0 ............................. | A [155659] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174598-173593 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUC01000004.1 Salmonella enterica strain BCW_3293 NODE_4_length_257474_cov_3.42062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174597 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 174536 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 174475 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 174414 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 174353 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 174292 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 174231 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 174169 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 174108 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 174047 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 173986 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 173925 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 173864 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 173803 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 173742 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 173681 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 173620 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //