Array 1 65040-63545 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJK01000028.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB4337SAL scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65039 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 64978 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 64917 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 64856 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 64795 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 64734 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 64673 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 64612 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 64551 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 64490 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 64429 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 64367 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 64306 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 64245 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 64184 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 64123 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 64062 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 64001 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 63940 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 63879 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 63818 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 63757 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 63696 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 63635 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 63574 29 96.6 0 ............T................ | A [63547] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 81567-80318 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJK01000028.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2012CEB4337SAL scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81566 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 81505 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 81444 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 81383 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 81322 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 81261 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 81200 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 81139 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 81078 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 81017 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 80956 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 80895 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 80834 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 80773 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 80712 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 80650 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 80589 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 80528 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 80467 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80406 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 80345 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //