Array 1 730-1237 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000102.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 730 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 790 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 850 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 910 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 970 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 1030 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 1090 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 1150 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 1210 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 347263-345633 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000001.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 347262 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 347202 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 347142 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 347082 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 347022 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 346962 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 346902 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 346842 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 346782 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 346722 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 346662 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 346602 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 346542 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 346482 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 346422 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 346362 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 346302 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 346242 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 346182 28 100.0 14 ............................ CATACCAGAACTAG Deletion [346141] 346140 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 346080 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 346020 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 345960 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 345900 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 345840 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 345780 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 345720 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 345660 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4915-3389 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000026.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4914 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 4854 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 4794 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 4734 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 4674 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 4614 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 4554 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 4494 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 4434 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 4374 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 4314 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 4254 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 4194 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 4134 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 4076 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 4016 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 3956 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 3896 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 3836 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 3776 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 3716 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 3656 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 3596 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 3536 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 3476 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 3416 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : CGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25874-25426 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000035.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25873 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 25813 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25753 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25693 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 25633 28 100.0 32 ............................ TACGTTTGCACTCTTCTATATAGTGAGGGTTA 25573 28 100.0 32 ............................ AACTTCTCCCGCACACAAAGGGAGAGTGGGCG 25513 28 100.0 32 ............................ TAGAAATCCTTGAATATAGTCAGACCCGTAAT 25453 28 92.9 0 .C..................A....... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : AGAGGATTAATTGAGCGCTTTTAGTGAATATTTATTCATTGCACCACAGCGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTTCTAACTCACTGTTTTATCAGCGAATTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAAAACCATCACAGCATTTTAAGAAACAATAAGTTAAGTTAAATCAGTTGGTTATATTTTATATATGTGCATTGATGTAGAGCTATATATGATGTTGTCGCCACTTGAAATTAGTCATCTTCAATCTGATCGTAAGGGTTGAGAGTTAGCGCCAAATCAAGATGCTCTGGAGCAAAGTGCGCATAGCGCATTGTCATATTTATAGTGCTGTGACCTAATATTTGTTGTAGTACTAAAATATTGCCGCCGCGGGTCATAAAATGTGATGCAAATGTATGACGGAGCACATGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29255-28806 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000035.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29254 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 29194 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 29134 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 29074 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 29014 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 28953 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 28893 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 28833 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27753-26405 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSEZ01000004.1 Photorhabdus laumondii subsp. laumondii strain C-TT01 C_TT01i_1_scf0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27752 28 100.0 32 ............................ ACAGCTCACGAAATGCAACACGATGCATGATA 27692 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 27632 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 27572 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 27512 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 27452 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 27392 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 27332 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 27272 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 27212 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 27152 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 27092 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 27032 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 26972 28 100.0 31 ............................ TCACGTCATTTGTACCAATTTACTGACAACA 26913 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT G [26912] 26852 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 26792 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 26732 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 26672 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 26612 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 26552 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 26492 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 26432 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //