Array 1 1648544-1647055 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134320.1 Streptococcus mutans strain NCTC10832 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1648543 36 100.0 30 .................................... CAATGAATTTCATCAAATCATACCCTTAAT 1648477 36 100.0 30 .................................... TGTTTGGGCGGCTAATGGTAACGATATCTT 1648411 36 100.0 30 .................................... GATAAGCGTTAGAACCAGAAACAGCATATC 1648345 36 100.0 30 .................................... TTGCGGACAAGACTTGTAAAGTCGCCAAAG 1648279 36 100.0 30 .................................... AAAACTTGCCTCTGCTAGCTCTCTGTCGTA 1648213 36 100.0 30 .................................... TTCTTTAAACTCTAGCGCTATCATCTCGTC 1648147 36 100.0 30 .................................... AGCAGAGGCAAGTTTTGGGAATTTCGGAGT 1648081 36 100.0 30 .................................... CTGTCTTTTGTCAGCTCTTTAATCATACTG 1648015 36 100.0 30 .................................... ATCAGGAAGCGACAGCAAGGACAGTGGGAC 1647949 36 100.0 30 .................................... TTTTCCATTCTTGCTCTTGATTAGTCAGGT 1647883 36 100.0 30 .................................... TTATTATGGTTCCCATCAGCAATCCCTTTT 1647817 36 100.0 30 .................................... ACATATTTTACCAATTAATCACCTTCTTTC 1647751 36 100.0 30 .................................... GATAAAGCGAATGGCAATCTGAGATTTAAT 1647685 36 100.0 30 .................................... TTTAGTGCCCCACATTTCAGAGGTAATTTC 1647619 36 100.0 30 .................................... CAAGCTTAATGACGATGCCACACCAGGCAC 1647553 36 100.0 30 .................................... CGGATATGAATTACATATTATCTATAATGC 1647487 36 100.0 30 .................................... TCCATTATTAACTGGTATCCGTTGAATATT 1647421 36 100.0 30 .................................... CGTACTATTATCGAACCAGCATCCAGTTGA 1647355 36 100.0 30 .................................... TCGACCAATCTTTTTCTCAACTTGCGCAGT 1647289 36 100.0 30 .................................... AACTACATGGGCATTGATGAATGTGTCTAT 1647223 36 100.0 31 .................................... TTATTTGCGTCCTGAAGTACCAGCCACGTTT 1647156 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 1647090 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [1647075] ========== ====== ====== ====== ==================================== =============================== ================== 23 36 98.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : ACATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1751850-1750112 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134320.1 Streptococcus mutans strain NCTC10832 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1751849 28 100.0 33 ............................ TGTTCTTGCGCCCGAATTGGTCATTGATGGCTA 1751788 28 100.0 33 ............................ CCGTACACTGTGCCGTCATTTTGGATAAAGAGA 1751727 28 100.0 33 ............................ CAAATCTAAGCTTAATTTGCAAGTTACAGACCA 1751666 28 100.0 33 ............................ CAATAACACGCAATATATCGATTGCACCGCTGA 1751605 28 100.0 33 ............................ CGCTGAAACTGAAGCGCTGAAACGTAAGCATGA 1751544 28 100.0 33 ............................ TACGGCTCTGCGCCTGCACAAATTGTAGTTAGC 1751483 28 100.0 33 ............................ CGTAAGTCGAGCAGGAAATAAGTTCCATTAGGC 1751422 28 100.0 33 ............................ CAAGTCACCCGCTCGGGGCGCTTTGTTTGCTGG 1751361 28 100.0 33 ............................ TTACGTTTCCTGCAAAAGTTCCGAGGAAAGAGC 1751300 28 100.0 33 ............................ TATAACTGGATGGGTAACGGGCAATATCACCAA 1751239 28 100.0 33 ............................ TGGAAGTACAGCGCCTGACTCGACAGAGGCATT 1751178 28 100.0 33 ............................ CACAATCACTAGTAAGAGCTAGACTAAACGAAG 1751117 28 100.0 33 ............................ CGGGCGATAGAATACGTGTTGATGTATCCGACA 1751056 28 100.0 33 ............................ TAGTTGAGAAGCTTCTGGCTAAGCCTTTAACCG 1750995 28 100.0 33 ............................ TGATACACCGTGAAACTGCGATTATCTCCCACA 1750934 28 100.0 33 ............................ TGAACAGCACGCGCCAATTCATCAGGTCTTTCA 1750873 28 100.0 33 ............................ TATTTTGCATATTTTTGTTCCATCTTCTGAACA 1750812 28 100.0 33 ............................ CGCAGAACAAGCTTTAAAGTTTTTCGGGATTTG 1750751 28 100.0 33 ............................ TACCACGATACATGGGTCGATAAATTGGGGATT 1750690 28 100.0 34 ............................ TGTTCGTAAGGGCTGCTATCTAACAAAGACTCGA 1750628 28 100.0 33 ............................ CGGTTGGATATTCTTTCAAAATCTCGTTAGATG 1750567 28 100.0 33 ............................ TCAGTGAAAGCACAAAAGCTATGCTGATGGAAC 1750506 28 100.0 34 ............................ TATTACTCTATATTAGTAAATTGCAAATCTTATG 1750444 28 100.0 33 ............................ CTAATATTTTTTTAAGTTTCATCGGTTATCCAC 1750383 28 100.0 33 ............................ CGGCTTGACTTCAGTACAGCAAGAGCTTGCAAA 1750322 28 100.0 33 ............................ TGCTATCCACTTATAATCAGCGGGATTTTGCGA 1750261 28 100.0 33 ............................ TAACTGAACGATGAGAAATACAATGAAATAGAC 1750200 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 1750139 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 29 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //