Array 1 416864-417981 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042272.1 Paenibacillus polymyxa strain ZF197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 416864 32 100.0 37 ................................ CTCCCCAAAACATCACATTACTGTCCGCTTTCTTATT 416933 32 100.0 37 ................................ TGCATCCACCTCTATAGCCTTTGCCTGTACCTCCAGA 417002 32 100.0 39 ................................ GAACGTTGTCCCACGCTTGGGCTGGTGAAGGTGGATTGC 417073 32 100.0 34 ................................ TGATATCGGTATGGGAGAAGAAGAAATAAGGGAG 417139 32 100.0 36 ................................ ATGTGATAAGTAAACAGTATAGACCAAAATGGGTAA 417207 32 100.0 36 ................................ CGTCCAGCCATGAAGCCTAGCCATAGCTCGCGCTTC 417275 32 100.0 35 ................................ AGCATTGTCATTCCAGTACCGCCGTGCTCGATCTA 417342 32 100.0 34 ................................ CTCAGGAATCTGTTCCTCTTAAAGCCGAGGGGTC 417408 32 100.0 36 ................................ TATGGATACAGGTGCAGACAATTCAAAGATGTATTT 417476 32 100.0 35 ................................ TTAGATAGAGTAGGGATATCTCCTGCATCGGCCAA 417543 32 100.0 38 ................................ AAATTATTCGGCAGAATGGTCGAGCTGCTGTACGTGAC 417613 32 100.0 35 ................................ ATCTAAAACAGCCTGGCTAACATCCTTCTGGGATA 417680 32 90.6 35 ............GC.....T............ ATTCAGTTGGAATCAAAGAATTGGTGTTAACGAAA 417747 32 90.6 37 ............GC.....T............ TCAGGAAGCTTGGTAGCATTGGCGGCCGGAATAACAG 417816 32 93.8 35 ............GC.................. TACGAGACTGGTCATCAAAAAATATGACGATTCGA 417883 32 100.0 35 ................................ TATACCTAGTATATCGCACTCTCTAAACGAATACT 417950 32 84.4 0 .........C..G........C.A...A.... | ========== ====== ====== ====== ================================ ======================================= ================== 17 32 97.6 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TAAGTTCCGTATTCGTGTCAATGTCATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACTGAGAAATCGGAAGGGTTAAAGCGGATCACCATCCCTGTGCAATTTCCCGAAGGAGATCAGCCGTTGGCAGATGGACCAGGACAACCCGAACAGGTTGCTGATTTGGTGACATTCTTGGCATCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGACGGGGCAGAGTCATTATTGTTTTAAAAAATAGAGCATTCTCTGGGATAGAGAGAGGTTTTGTGGTATCTTAAGTGTATTCATACTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAAATACATTTATATTCACTTTTATCGTTAGTTGTCAATAATCGATTCAAGCTTTTTAAGCATCGTTTTTTTCGAAAATATATGGAATTAATACCGTTAGGGTATTAATTCCTGCATTTTCGCT # Right flank : TAATATATATTATTTAACTTTCGTAACAACTCCCAGTAGATTCTTCATGATTGTAGCCAAAATATATTGATAACTTCAGGAATATCGGTATCGTTTTCTTGAAAATATTATTTCCATATGACTATAAAAATATTTGTTTACATAACGAGAATAAATCTAATATGATTAAGAAGTCGCAGATAATCTAGTATTTTTAGGCGAAATGCAAACCTCTTCACATTAAACAACCCATAAGTTCCTAAAATGAATCCTTAGACAGGATGCGAAACCGAGAGCCTTGAATTAAGTAGATAAAAGATGAGGGTGGAGCATATAACGCTGCGAGAATATATGAAGATTATCTAATAGTTCACTTAACAACGTAAAATGTTTAAGTTACTTATTCTGGGCTTTGTCGATATTACCTTATGCATGGTCACACATTTAAATTATTTGTTTGTTCAATGGAGGTAAAAGATGAATTTATTAGCTATTCCTGGTCTGTATTTTTATATCTATTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 427094-428159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042272.1 Paenibacillus polymyxa strain ZF197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 427094 33 100.0 36 ................................. CCCTATTAACTAAAAAAGTTCGGTCTGATAGTCAGA 427163 33 100.0 34 ................................. GTTCAAGCCGCTGAGACTTGTCAAGGTTGAAGTC 427230 33 100.0 36 ................................. ACAAGACGGCCTGTACTGTCTGTAACGATATCTGGA 427299 33 100.0 36 ................................. CGCGATTGAGCGCATCCGTTACATGGTCGCGGAGGG 427368 33 100.0 37 ................................. ATCGTTTACAGCGGAGAAGGCGGATATTATACGGAAG 427438 33 100.0 36 ................................. AAACGGTCTCACGTTCGTTTTCAGACTCCTTTTCGG 427507 33 100.0 35 ................................. TTTGCCGACTGCACATCCTTACGGATTAAATCTAC 427575 33 100.0 37 ................................. AATTTCCTTCGCTAGCTTAGTATTCAAATGTTCCTTG 427645 33 100.0 35 ................................. CGGTGTGACTCAGACTTTCCACCGAACTGCTTCGC 427713 33 100.0 37 ................................. TACGATACTTTACGTGGACTCCAAAACGCCAACTAAC 427783 33 100.0 35 ................................. CTTATTATGAAACCCATGAGGCCTCGGATACTGAA 427851 33 100.0 36 ................................. ATCAGTAAATTGTTCAGACATATGATCGTCTCCTTT 427920 33 100.0 37 ................................. TGGCTCTGACTCTGACATGTTCGGATTAGGTGCTGGA 427990 33 100.0 36 ................................. ATCACCCCGAGCATCGTCGGCTTTGTTCCAAATAGT 428059 33 100.0 34 ................................. TCTTCGAGTTTTTTAGACATGTATGTAGCCTCCT 428126 33 87.9 0 ..........................A...CGG | C [428152] ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.2 36 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGTTTAAAATATGAACTCGAAGAACTGTTAGACAAAACAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTAAGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTGAAAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGGCATAAGTTTTTGCGACAATGTGTGGAATTGATATCATTAGGGTATCAATTACTGCATTTTCGCT # Right flank : GAGCAGCTGCCACTTGGTTGTACGAGTGGGGAGTGCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTGGGGACTGGACATTTTGCGCGGTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAGGGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTTACATAAAAACCCTAGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAATGCTGTCTATGAGAAAAAGACAATAGTTGATATAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTGATATCATTAGAGCATCAATTACTGCATTTTCGCTGTCGCACTCTATATGTGTGCGTGGATTGAAATAACGCTGTTTGTTTTATTGCTTTGCTCACGTTGTAGGTCGCACTCTATATGTGTGCGTGGATTGAAATTCCACCCAAATCCTGCACTTCGACCAGCCGAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 428526-429101 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042272.1 Paenibacillus polymyxa strain ZF197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 428526 32 100.0 36 ................................ AACGCTGTTTGTTTTATTGCTTTGCTCACGTTGTAG 428594 32 100.0 38 ................................ TCCACCCAAATCCTGCACTTCGACCAGCCGAACGTTTG 428664 32 100.0 37 ................................ AATTTATTGCAAATGTCCATAGAAAGGAATGGCTGCA 428733 32 100.0 33 ................................ GATCCGCAATAGAAAGGGCATATTTGGAGTATA 428798 32 100.0 37 ................................ CATAAGTACATGGGCGAACAAGGCGATTACACTCGTG 428867 32 100.0 33 ................................ ACCAACTTGCTTGATCTCAATGATCTCGCGGTC 428932 32 100.0 37 ................................ CTGCCGGAATGACGGAATCGGACGTTAGCGGAACGGA 429001 32 96.9 37 ...............A................ TCGTAGTTTAAGTGGTGCAAAAGTAAAGCAGATCCAC 429070 32 87.5 0 ...............A.......A...A...A | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 98.3 36 GTCGCACTCTATATGTGTGCGTGGATTGAAAT # Left flank : ACCCCGAGCATCGTCGGCTTTGTTCCAAATAGTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATTCTTCGAGTTTTTTAGACATGTATGTAGCCTCCTGTCGCACTCTGTATGGAGTGCGTGGACATGACGGAGCAGCTGCCACTTGGTTGTACGAGTGGGGAGTGCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTGGGGACTGGACATTTTGCGCGGTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAGGGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTTACATAAAAACCCTAGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAATGCTGTCTATGAGAAAAAGACAATAGTTGATATAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTGATATCATTAGAGCATCAATTACTGCATTTTCGCT # Right flank : AATTTTCTATTGTTGGTGCCTCCTATCGGATAAGCTGCTTATACTCCATGTGAGTGCATGGATAATATGAAACAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTTTTTTAACGGATTCCTTATTCGACAGATTCCCCCTTACTTTTATGCAATAATTAACTAGCATTACTATGTTGAAGCATAAAATTAACTGGTGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAACGCTATGTAATGATTTTATTGAGCTACGCAATAGGTATAGGGTTATTTTACGCTTTAGGATATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACGGGAATTGTGACTGGAGAAATAATCAACTTCGCATTATCAAAGCGCGAGAAATGAACTTATATATCCCTTGATTGCATCAATATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTCTGCATGTGACCTCTATATCATTTGCTGGT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGTGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //