Array 1 9696-10708 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LKGI01000108.1 Lacticaseibacillus paracasei strain FAM6012 FAM6012_scaffold_0108, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
      9696	    29	  96.6	    32	............................C	TCAGAAACAAGCCGATGAGCAACTTGCTAAGA  	
      9757	    29	 100.0	    32	.............................	CTGATCGTTAATAGCGTCCCGACGTGCCTTGG  	
      9818	    29	 100.0	    33	.............................	GATGGCAACATTTAGGAAACGCGGCAAGTATTG 	
      9880	    29	  96.6	    33	............................C	CACACGGCCTTGAATAGGCGCACAAGCCGGACG 	
      9942	    29	 100.0	    33	.............................	ACAACGAGAGCGGCACCAGCCAAGGCACCACCA 	
     10004	    29	  96.6	    34	............................A	TACCTTGTTGACATCATCAACCGCACCAAGATCA	
     10067	    29	 100.0	    33	.............................	TGGTTATTAAGCGTATTGGTATCATAATTAACA 	
     10129	    29	  96.6	    32	............................C	GCTAAAGCCGGAATACCTTCAATGGGGCTTGT  	
     10190	    29	 100.0	    32	.............................	GATGATTTCTACGCAATGTATTTATCTGATGA  	
     10251	    29	 100.0	    32	.............................	GGCGGTCATCATTTCGTCCTTGCTAACGCCAA  	
     10312	    29	 100.0	    32	.............................	CGGAATACGAATAAAAACCAATATGGACATGC  	
     10373	    29	  96.6	    33	............................C	AGTATGAAGTAGGTAAAACTTACCACGAAGACA 	
     10435	    29	  96.6	    33	............................C	AATCACACCACTGGCAAATCTTGATGATGAGAA 	
     10497	    29	 100.0	    32	.............................	GATGGTTCGTCCATTATCTACATAGTGCCGTA  	
     10558	    29	 100.0	    32	.............................	CCTAGTGAACAGGTGCAGCTAGAAGCAGTAAA  	
     10619	    29	  93.1	    32	..............C.............C	GACATGAGGCCGATCGTGTGCTGCTCGACATG  	
     10680	    29	 100.0	     0	.............................	|                                 	
==========	======	======	======	=============================	==================================	==================
        17	    29	  98.4	    33	GTATTCCCCACGCATGTGGGGGTGATCCT	                                  	       

# Left flank :   GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAATTAAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGAACATAACTTGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTCAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAACCAGATCTATCCAATCAAATGGTAGATCTAATGCCAGTTATAAAAAAAACAAACAAAATTCTTGATAATTATCGTTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAAAAATGCTGTTATGGCGGGAATCGTTTAGT
# Right flank :  TATCATTCGATCAGCTACAAAGGTTCAAATTGGGTATACCCTAATGGCCGTTTTTATTTCTGTGCTTTACTAGGAATTACAGATGTTCATTAGACCTGTCCAAATAAACCTATCAGACAGGTCTTTTGGTGATATGCAAAAAAGGAGTGAGAATAGATATGACAGTGCGTCCTAAATTTAATAAAAGTATGACCAGTGAAACATTTTCTAGCTTTTATTGGTATAAAGGGGAATTTAAAAACATTTGTAGCCAATATGGATTACCAAGATACGGTACACTTAACTTGTGAGTGGCTAAGTGCTACGCCGTCTGCTGTACCGTCAGTAGGCGGTTTTTTTCGTTTTGAGGTTTTTAGCGCTATGCAACCGCGTAAACTCCACTTTGAATACGTTCAAACTCGGGATAGCGCTGTACCACTGCCCGTATTTGTTCGCGCCAGTGATCGTTGTTGACCGCTTTTTTAGCCCCATCGAGGGTTTCGTACAGGTCTTTCAGGGAA

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCACGCATGTGGGGGTGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.50,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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