Array 1 89649-90682 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUR01000010.1 Pseudomonas kirkiae strain P30C NODE_10_length_167878_cov_94.375121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================================================== ================== 89649 29 75.9 234 A.......G...A.C.....A....T.T. GCAGCACCTGGAGGCAGGGCACGAAGACGGCAACGCGGTTATGGCCTGGGCCAGCAATACCGAGTCCGGGTATGACTTCCAGACCCTGGGCGTCAATCGCCGTGAGCCTATCGATTACGATGGACTCCGATTGGTCGCTTTCAGCCCCCAGAAAACCCCTGATCTTTAAACACGGAAATCGGTAGATTTTTATGGGTGTATTTTCTCTATATGGATCAATTGGTTATGATTGGT T,A [89651,89669] 89914 29 100.0 39 ............................. GTTTTCGGCGCCGGCTCGCGGGTCGATGTCGGTGGCCTG 89982 29 100.0 32 ............................. TTGGTGAGGCGCCCTTGTCTACCTGAATGGTC 90043 29 100.0 32 ............................. GTTCGGGGGCGAGATCAGGGTCCACAGCAGCA 90104 29 100.0 32 ............................. CTGCTCATTCGTTTTTCCTGCGCCACGCCTTC 90165 29 100.0 32 ............................. TAGAAGTTCCCCGACCGGCCCTGAGCGGTGCG 90226 29 100.0 32 ............................. GAGTTACCCGCTGATCCGCCCCGAGCCGCCGG 90287 29 100.0 33 ............................. GACGCCAAGGCCGCTACGGAAAGCATCGGCAAC 90349 29 100.0 32 ............................. ATTGGCGATCGAGTTGATGCAGAGATGCGGCG 90410 29 100.0 32 ............................. ATAGCCTTGAGGTCGGCCGGGTTGACCGGCTT 90471 29 96.6 32 ............................A TGCTTGGCGACACCCCGACGTTTCACACCTTC 90532 29 100.0 32 ............................. CGCTCGACCCGAGCAGGGGCCTTGCCGCGCTG 90593 29 100.0 32 ............................. ATTGGATGCCACCCTGGCTAGGATTGAGTCCG 90654 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================================================== ================== 14 29 98.0 48 CTGTTCCCCGCGGATGCGGGGATGAACCG # Left flank : CGGATATTCCCAATCGCTGCCTTTCTGCCGCCACGGCCTGCCTCTATGGCATCACCGAGGCGGCGGTACTGGCTGCCGGCTATGCGCCGGCGGTTGGTTTTATCCACACCGGCAAGCCGTTGTCGTTCGTCTACGATATTGCCGACCTGTACAAGTTCGAGACCGTCGTGCCGCTGGCTTTTCGCATCGCCGCCAAGTCGCCGACCGAGCCGGAGCGGGAGGTACGCCTGGCCTGCCGTGACCTGTTTCGCTCGGACAGGCTGCTCGGCCGTATCATTCCGTTGATCGAGGAAGTGCTGTCCGCAGGTGGCATTTCTCCTCCAGAGGCTCCACCTGAATCCGTGCCTCCGGCTATTCCAAATCCGGAAAGCTCTGGCGATGCCGGGCATCGGAGCCGCTGATGGCCTTCCTTGTCGTCGTTACCGAGAACGTTCCACCGCGCTTGCGCGGACGGATGGCCATATGGCTGCTGGAGGTGCGTGCCGGCGTCTATGTCGGCG # Right flank : GCAATCTCGAACGGAGTGGCAGAAACTGCCGAGCCTGTTCCCCGCATCTGCAGGTACCGAGGTTCGTGCAGAGACGTTTCCGGCTATACGTGTTCCTCCGAGCCTTGCGCATTGCGGGCCTACATACTTCATGCCTGGCGGCGTAACACGGCATCCCCTCCATTGCGGTTCTGATCGACACTTACCCCTGCCCACCGAGCTCCCCGATCCGCCGGTCCTTGTCCTGCCACAGGGCGCTGACCCACTCCTGCATGCGCTGGCGGAATTGCTCGTCGTTCTGGTAGTCGCCCTGCCACAGCGAGGGTTCCAGCGGCAGGCTGCGGATGTCGACGATGACGCGCGGCACCTGGCCGCTGATCAGTTCCCAGAAGCCGGGCACGCGCTTGCCGGGGTAGACCACCGTGACGTCGAGGATGGCGTCGAGTTGTTCGCCCAGGGTGGCGAGCACGAAGGCCACGCCGCCGGCCTTGGGTTTGAGCAGGTGGCGGTAGGGCGATTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGGATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182141-181813 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUR01000006.1 Pseudomonas kirkiae strain P30C NODE_6_length_227610_cov_95.632380, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182140 28 100.0 32 ............................ TACAACCTGGAAATTCCCGTCGATCGAGACCA 182080 28 100.0 32 ............................ ACCTGAACCGCCGCCCATGCCGGACTCAATCC 182020 28 100.0 32 ............................ GGCAGAAGGCCGGAAATCCAATGATTCGCCGG 181960 28 100.0 32 ............................ TGAAGGCGCGACGCTACATGCCGAAGCGGTAG 181900 28 89.3 32 .....T......A...A........... AGCCACCCTCGAAGTCCATGTTGCAGGCGTTG 181840 28 75.0 0 .C.........CAC.......CTG.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGCCCCGCCCGTCGATGGCAAGGCCAACGCCCATCTGCTGGCATTCCTGGCCAAGGCCTTCGGCGTGGCGAAGAGCCAGGTGAGCCTGGAGTGCGGCGACTCGAACCGGCAGAAGCGCCTGCGCATCCACGCCCCACGACAGTTGCCGGACCTGCCGGGCCTGGTGCGCCCGGAGAGCTGACCCACCGACCGGGCCATTCAAAGAGTGGCCTGTCATAGCCGTGCCATACATGCCGGGATTCCCGCATAGGCAGGCAATCCCGGCAATACACTCACACCACTCACCTGTGCCCCCGCCTGCGCGGGGACGACGGATACTGCGCCCAGGCAAACATTTCTGCCCCCGGGTTCAGCCCGTACCCTGCCGCTGACCCTTTTTCCAGAGCCTGTATCAGGCCATTTAAAATCAATAACTTACAGACAGACCAGAAAAATGGGTAAACACAGTAAAACAAGGCATGGCGCTTTCCCAATCAAGCAGTTAGCGTAGCGATGCTCTA # Right flank : GCCGCGTCCTTTCCGTCCCGTGCTTGCTGCTGGGGGCATCGCTCTTTAGACTTGCGCCCTTCCTCCGATTCAATAGCAGGGTCGCAATGCCCACTGCCTTTCCCGAAGACTCCATCGGCCTGGTCCAACCCCAGGTATTGCACTTCAGCGAGCCGCTGGCGCTGGCCTGTGGCCGCAACCTGAACGAATACGATCTGATCGTCGAAACCTACGGCGAGCTGAACGCCGCGCGCAGCAATGCCGTACTGATCTGCCACGCCCTTTCCGGCCACCACCACGCCGCCGGCTACCACAGCGCGGAAGACCGCAAGCCGGGCTGGTGGGACACCTGCATCGGCCCCGGCAAGGCCATCGACACCAACCGCTTCTTCGTCGTCAGCCTGAACAACCTCGGCGGCTGCAACGGCTCCACCGGCCCGAGCAGCGTCAACCCCGCCACTGGCAGGCCCTATGGCGCGGACTTCCCGGTGGTCACCGTGGAAGACTGGGTACACAGCCAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16106-15435 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUR01000019.1 Pseudomonas kirkiae strain P30C NODE_19_length_98766_cov_110.688744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16105 28 100.0 32 ............................ ACATCCGCGCAGGTACGCGCCGCATTTGCTGA 16045 28 100.0 32 ............................ TGTATGCGTTGCTGCTGCATTCGGGGGATATG 15985 28 100.0 32 ............................ GGTCTCATGCTCACGCCGGCTGACGGTCAGTG 15925 28 100.0 32 ............................ GAGACGCGCAAACCCGCTCCCTGCCGGATGCC 15865 28 100.0 32 ............................ TGGCATTGGGTGACGCTGCCCGGGACCTGATA 15805 28 100.0 32 ............................ AGGCAGGCGCAGCAGCAGGCCGAGGGCAGAGC 15745 28 100.0 32 ............................ TGGTTCCAACTGCTCAAGGGCCTGGAGATCAT 15685 28 100.0 32 ............................ ATAATCTCCTCAGCCAATCGCTCGGACTCGTA 15625 28 100.0 32 ............................ TGCAGCGCGAGACGCTCGAACCCAGCGGCCTT 15565 28 100.0 32 ............................ CAAAAGCACCAACTGTCAAAAGTCGCTGAGGA 15505 28 92.9 15 ........................C..C CCCAGTGGACGTACC Deletion [15463] 15462 28 82.1 0 ..........A.....C.G..AA..... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.9 31 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGCCTGCTGGCGCTGAACTGGCTCACGGGCATGCGCGACCACGTGCGCCTGGGCGAGTTGGCCCCGGTGCCGGCAGGGGTGCGTTATCGCCACGTCAGCCGTGTGCAGGTGGACAGCAACCCGGAGCGCGCCCGCCGACGCCTTGCCAAGCGTCACGGCATCAGCGAGGAAGAAGCCCGCCAGCGCATCCCGGACAGCGCCGCCAAACGCTGCGACCTACCCTTCGTGATCCTTCGCAGCAATGGCAACGGGCAACCCTTTCGACTGTTTATCCGCCATGGCCCGTTACTCGACATCCCAACCCACGGCCCCTTCGGCAGTTACGGCCTAAGCGCCACCAGCACCATCCCCTGGTTCTGACCCTTTTTTCAGGCAACGCTGGAGCCCTTGTAAAATCAAGCAGTTACAAGCGGCTTCAGAAAAAGGGTAAAGCCTGTGGAAAATGGCTTTTTCTCTTTGGAAACGGATAGTTATTGAGGAAACTGGCTA # Right flank : CTGATGATGGCTATACCGGCCACGGCGGGCCTTATTGCCGCTCCAGTGCCTCCAGCTCCCGGACAGCCTCTTCCAGCTTGCGAGTCCTTTTCTCGATCTTGCCGGGGTCGCCGCCCTGCTGGGCTTCACGCAGGTCGGCCTGGCGTTCCTGGACTTCGGCCTGCACCGCCTCGTAGTCGGCCTGGCGCTCTTGCCGCAGGCCTTCTTCGGTACAGTGCTCGCGCACGGCGCGCAGGGCCTTTTCCAGGCCGTGGGTGCGGCCCTCGTTGCCGTGCGCCCTGGCTTCCTCTAGCTGGCCGAGGATCGCGCGCTCCTTGTCGGCACAGCTCTGCGGTGCGGCCTGTATGGCCGTGCAGAGCAGGAGGATGGGGGACAACAGCAGCGAACGGGGTAGCGATATCATTTCCGGAACCCTTCCTGTGAGTTTCCGGCAGCCTAACACTCGCGGTGGCCGCTGGGCCTCCGTAGAATTGCGCTCTTTTTCCCGGAGCCTGCCGATG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //