Array 1 57527-54691 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPA01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57526 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 57465 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 57404 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 57343 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 57282 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 57221 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 57160 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 57099 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 57038 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 56977 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 56916 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 56855 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 56794 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 56733 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 56672 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 56611 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 56550 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 56489 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 56428 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 56367 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 56306 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 56245 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 56184 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 56123 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 56062 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 56001 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 55940 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 55879 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 55818 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 55757 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 55696 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 55635 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 55574 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55513 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55452 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 55391 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 55330 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 55269 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 55208 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 55147 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 55086 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 55025 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 54964 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 54903 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54842 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54781 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54720 29 93.1 0 A...........T................ | A [54693] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76077-74034 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPA01000006.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76076 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 76015 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 75954 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 75893 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 75832 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 75771 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 75710 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 75649 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 75588 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 75527 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 75466 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 75405 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 75344 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 75283 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 75222 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75161 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 75100 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 75039 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 74978 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 74917 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 74856 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 74794 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 74733 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 74672 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 74611 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 74550 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 74488 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 74427 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 74366 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 74305 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 74244 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 74183 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 74122 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 74061 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //