Array 1 55180-56587 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLPE01000058.1 Pseudomonas aeruginosa strain WH-SGI-V-07417 WH-SGI-V-07417_contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 55180 28 100.0 32 ............................ AGCCCCACGTTGACCAGTGCCGGAATCGACTG 55240 28 100.0 32 ............................ TGTAGCGGCCCGTCGCCAGGCCATCCTGGATG 55300 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 55360 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 55420 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 55480 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 55540 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 55600 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 55660 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 55720 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 55780 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 55840 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 55900 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 55960 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 56020 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 56080 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 56140 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 56200 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 56260 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 56320 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 56380 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 56440 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 56500 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 56560 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 24 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 67961-65112 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLPE01000058.1 Pseudomonas aeruginosa strain WH-SGI-V-07417 WH-SGI-V-07417_contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67960 28 100.0 32 ............................ AAGCTCCTCAGGAGGAATAAGGCCTTCGCTTT 67900 28 100.0 32 ............................ TCCAGACCTACGTTGTTATCGACCCAGTAAGC 67840 28 100.0 32 ............................ AAATCCCGGAGGGCGAAGCGAATGCCAAATTA 67780 28 100.0 32 ............................ TGCCGGGTTCCCCAACGCAGGCCCGATCCACC 67720 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCGACTACTCG 67660 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 67600 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 67539 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 67479 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 67419 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 67359 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 67299 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 67239 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 67179 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 67119 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 67059 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 66999 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 66939 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 66879 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 66819 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 66759 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 66699 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 66639 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 66579 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 66519 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 66459 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 66399 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 66339 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 66279 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 66219 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 66159 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 66099 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 66039 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 65979 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 65919 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 65859 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 65799 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 65739 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 65679 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 65619 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 65559 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 65499 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 65439 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 65379 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 65319 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 65259 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 65199 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 65139 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //