Array 1 54067-53446 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQO01000001.1 Anaerobutyricum hallii strain AF31-17AC AF31-17AC.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54066 30 100.0 35 .............................. GTACAAAGACCAGACGACCGTCCTCTTTGAGAAGA 54001 30 100.0 35 .............................. ACTTCCAGGCAAAGGAGACGTAGCTGTTGATACAA 53936 30 100.0 35 .............................. TTTGTTCAATATCAAACAGCAAAAGCAATTAAAGA 53871 30 100.0 38 .............................. TGACTATTCTTTGATTGGAACTTCTGTCGGGAATGGAA 53803 30 100.0 36 .............................. GAAGAACCAGAACAGAAGCCGAAAAAGAAAAGCTTC 53737 30 96.7 35 ..............G............... TATAATTTGACATAGCTTTAAGCTGCATATTGTAG 53672 30 100.0 35 .............................. AGAGAATTGTTACATAAATATAATTTGATGTCCAA 53607 30 96.7 35 ........G..................... ACAAATTGGATCTGCCTCACTCTGCCGCCTTTTGT 53542 30 100.0 36 .............................. AAGGTAAAAAAGATATAGCAATCAAATATGGTAACT 53476 30 86.7 0 ...........A.....C.....CA..... | T [53448] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.0 36 ATTAAAATAGAGACATATTGGAATGTAAAT # Left flank : AAGGAAGATGCGCTGAAGAATTTGAAACAAGAGGATTAATTGCTCTCTAGATTTTAAAAAAAACAGACGGAAATAAAAAATAGATATATAGTATCTGTTCCATATCACTGCACGAATAATGCTTACCCGCATTATTCGCTTGCTCCAAAGTCACAGATACTATATATCTATTTTTTTATTTCCTGTCTTTGATAAATTGGAGAGGTTATTCAAATTTTAGGTTACTACTTATACTTTTAAACGCCTGTCCTTGGCTACTTCTCTCCTTCTATGCTTAACAAGAAATCTATTACTCCGTTCCTACTATTTTTAAACTGTCGCCCTCCGATAATGTAAAAATGCCCGTACATCGACAGAATTCTACAAACATGAAAAATAGGTGATTTTGTTTCTCTTTCGTAGAATTAATGAAGGAGATATGGTAAAATATTTGTAAACTTTGGCTGGTCAACAGAAAGCGGGGAAATAAGTTAGAAAAGAAGAGGGAATTCGGGCGATGG # Right flank : TTATTTTCCATCCCGTCAAAGACAGAAAACTAATTTATTACAATACAAAGGATTTTCACTTATGAAAGAAAGACTCATTTTTCACGTTGACGTAAATAGTGCCTATTTAAGCTGGGAGGCTGTCCACCAGCTTAAAAATGGTGCTTCTACAGATATCCGAACAATCCCATCGATCATCGGTGGCGATACTTCTTTGCGCAAAGGAGTTGTTCTTGCCAAGTCGCTTCCTGCTAAACGTTTTGGTATTCATACGGGAGAACCGGTTACCGATGCTCTGACGAAATGTCCTACTTTACAAAGTTTTCAACCGAATTTCCCTCTTTATCACAAATATTCCAAAGCTTTCATCACTATTTTAAAGAAATATGCTCCTGTGGTAGAACAGGTTTCTATTGATGAAGCTTACCTTGATATGAGCGGACTTCACTACTTCTACTCTACTCCGCTTGAAGCTGCCGAAAAGATTCAAACCGATATTAGGGAAACTTTAGATTTTACCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAATAGAGACATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 10103-12422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQO01000081.1 Anaerobutyricum hallii strain AF31-17AC AF31-17AC.Scaf81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10103 30 100.0 34 .............................. GAGGGTTATCAATGACTTGCTGTTTTGGTATCTT 10167 30 100.0 35 .............................. AACCATACTACAATTTAAATCAGCCATTCGACAAC 10232 30 100.0 36 .............................. TAAGGCCGACTGAGCTGTATTTTCTGCAATCAGTTT 10298 30 100.0 34 .............................. CTATTATATAGGGCGCTGCGAAATGGAATCATGG 10362 30 100.0 34 .............................. AAAATCCATGTTTTATCAGCTGTTTAATGTGTCG 10426 30 100.0 36 .............................. TTAATCATAACTTTGAGGCATATATGATTAAATCCC 10492 30 100.0 35 .............................. TTGTAAGTGTATTTACGGCATTTAACTGGTTCTCA 10557 30 100.0 35 .............................. ACCAGGCGGTACCACATGTCTAACGCCTGTTCGTT 10622 30 100.0 36 .............................. GAAGGAGATTATGGATGAGCTCATCAATTACGACAC 10688 30 100.0 35 .............................. AAAGAAGTGTTTGCAGATGCCGTTTCAGCAAGTCA 10753 30 100.0 36 .............................. ACTTCATGAAATATGAAGACGGAACAGGATTAATAG 10819 30 100.0 36 .............................. GTAGAAAATATCGACTTGTATTATATTGACCCCGGC 10885 30 100.0 36 .............................. AGGCAAAAATCTGTCCAAATTGTAGGAAGAAACAAG 10951 30 100.0 36 .............................. AATATTACACAAGAGCGTGAGAAGCGTCAGAAGCTG 11017 30 100.0 36 .............................. TTGATATTTGACTGTGGCAAGTCATCACCTGCCAAA 11083 30 100.0 36 .............................. TTCGTTATTTTTAATACAATAATGCCACCATTTACC 11149 30 100.0 36 .............................. CAGCTAACAGACGGAAGAAAATTTATCACAATTAGC 11215 30 100.0 36 .............................. AGTAAAATGAAGGGAAAAATTTCGACAGGGCTCGGC 11281 30 100.0 38 .............................. GGAACAAGTTATGGCAGCAGGTCTCGAAGCGGCAAAAA 11349 30 100.0 35 .............................. GACGGCGGCGTAATTACTTATATTCATGATAAAAA 11414 30 100.0 36 .............................. TCCTTTAAAATTGTTACGCAAGCTGAACTGTGCGCC 11480 30 100.0 37 .............................. TCAGTTCACAGAACGAGGAAACTGTCCGGGGATGAGC 11547 30 100.0 37 .............................. AAAATCCTGTCTGTGACTCCTGCAGGTTAACGCAGCC 11614 30 100.0 36 .............................. CTCCGCTCCGCCGCTATCTCAATAAGGCAAACCATT 11680 30 100.0 34 .............................. ACAAACAAAGAAATGAGACAGGGAATCAATACAA 11744 30 100.0 36 .............................. TGCACTCTCGATATGTAAGTCTCCACGGCTCCATTT 11810 30 100.0 36 .............................. TTCTGGCATATCCTCTTCGGCATCTTCCGGAATTTC 11876 30 100.0 36 .............................. TGAAATCACTCCTTTTTATTTATTTAAAACCCTTTA 11942 30 100.0 35 .............................. CTAAATATTGTTCCGATTTCTTTTGTAAACAAATC 12007 30 100.0 34 .............................. AAATTTACTAATGTCAAATTTGACTCCAATTCGT 12071 30 100.0 34 .............................. GATGATGCAAATGTAAATGATGTGGTTAAAATTA 12135 30 100.0 34 .............................. ATTGATGGAATGGTATTAGGATATAAAGATATTG 12199 30 100.0 34 .............................. AATTAACACAAAATTCACAAAGCATTGCAATTGC 12263 30 100.0 35 .............................. GTGACTATATCTTTTTTAAATCTAGCGAAATGTCC 12328 30 100.0 35 .............................. ATGTCTTGTAATTAATAAAGCGGCTGTACAAACCT 12393 30 86.7 0 ...........T....AT.........G.. | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.6 35 GAATTAATAGAAACATTGTGGAATGTAAAT # Left flank : TTGTAAAGAAAACTTTGTCTTTACCTGCATGGCTGGCGGCCAAAGCCGATGAAGATGGTGTTAATTGTTCCAGAATATTTCAACTTGCTCTGATGAATTATTTACAGGTCAGTGAAGAGAATAAAGCAGGAATCAACTAATTTAATGAAATTCCGTTTGGTTGATATCGGACGGGATTTCTTTAGGTTCATAGGCGGTTTAAAATGAAAAATATAATTCTAAGTTGCAGTTTGATTATATTACAGTGAGTCTGCTGATAAGTAGAGAAGTAAGAATATACATTTAAAAAATTAAAAGAAATAGCATACGCGGTGAGAAAAATAAAATTATAGAACTGTCGATGTTCGATAAAGTAAAAAACAGGGGACATCGACAATGGCATAAATAAAAGATATATGATAATTTTTAAATGAGAATATAAGGGAAAAACACAGATTGAGTCTAAGGTTGACAGAAATAGGAGTGAAAAAGTAGGAAAAATGAGGAAAATTAAGTAACGG # Right flank : TTATTATCATAATTAATATTTAGCAGATGGGATATATCAAAAAGAAAATATGACAATGATTTTAAACGGGACATGAAATTGCTAACAGTGATATTTTAAGTGAGGTGCTGAAAGGTGATGGAGTATGAGAATTATGGAAAATTAGAGAGTCTTGCAGAATTAGAAAATGCCATAGAGATGGGATTAGATATTGAGTTTCTTCTATATGATACGAGGTATAATATTTCTTGGAGAGATAACAAACCATTTATATGCGAATGTCCAGAAGGAGTGGCTAAGTTTTTTGATACCTCAGAACTTTTGTTACAGAGGTATGAAGTGGGTGACAATCCTCTGAAATCTCTATGGGGAGATATGAAAATATTATCTATGTGATTAACATGTTTGGTAAATGGAAGGCGGACGTGTTAATTTTATACCTATTTTAAGGAGAAATTTTATAGAAATACTCTGGAATACATTTGCACAAACTCCTCGCATAGTTTAAAATAGGAAACAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGAAACATTGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 71844-73907 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQO01000013.1 Anaerobutyricum hallii strain AF31-17AC AF31-17AC.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 71844 30 100.0 35 .............................. TCGGACAAGGCCTACGGAAAGCAGCACCGTACCGC 71909 30 100.0 36 .............................. TTTGTCAGGCTTTTTCCTACTCCCTCTACACTTTTC 71975 30 100.0 37 .............................. AAAAAGATAACTGCTGCATCTCGGAATTCGCATAAGA 72042 30 100.0 35 .............................. ATTGGATGCAGTAAGGATAGCGAAACATTAGGATT 72107 30 100.0 34 .............................. AGGCAGAGGACGAAACAGGTTATTGTTACTGTCC 72171 30 100.0 35 .............................. ATAATGTATGCGAACATTGTAATAGTAAGAGAAAC 72236 30 100.0 38 .............................. GGTCTCCATCCCTTTAAAAGCAAGTGTATTTCGTGCCA 72304 30 100.0 36 .............................. GTGGTTCCCTCGACTAGATCGATTGTATTTGTTACG 72370 30 100.0 36 .............................. TTTTTTGAAATAATCACATATTTTATCAGCATTATA 72436 30 100.0 36 .............................. TCAATTAACGAAGAAACAAAAGATTTGGTTGTGAGA 72502 30 100.0 38 .............................. TTATTCTGGCGAATGACGGCATTACTCATGGCAAAATT 72570 30 100.0 36 .............................. GACAGAGGTAGAGAATATAAAACAAGAACGAAAAGC 72636 30 100.0 35 .............................. ATACGTTTCGACACTGCAAAATGAGAGTAAATTCA 72701 30 100.0 34 .............................. ATCGCTTTGCTTCCTGTTTTCTGAATAACTGGAC 72765 30 100.0 35 .............................. AAGATTGTATGTCAACAGTATAGTGACTATCTATA 72830 30 100.0 35 .............................. CAGGCTGACACAACCTAGGGGATAGCCGACACACG 72895 30 100.0 35 .............................. GCAAACTGACAGACACAATCAAAAATATTGACAAA 72960 30 100.0 34 .............................. GTGGATGTACGCTATTAACAAGGCGATAAAGCAG 73024 30 100.0 35 .............................. TAAAAAAAGTAACGCACAATATAAACAGGAGCGGA 73089 30 100.0 35 .............................. ACTTATTACATTTATACGAATAAGGACGGGACACA 73154 30 100.0 36 .............................. TTGCCGCTGACTTAGGGATGATTATTCCGACAACCA 73220 30 100.0 35 .............................. CGCTTCGTACTCCTCATTTACTTCTGCTATATATT 73285 30 100.0 38 .............................. TGCGTTAAGATGAATACCGCAAAATCATCACGCATCGT 73353 30 100.0 36 .............................. CGATAATAACGGGCAATCCACCAGTTCTGGCACTTA 73419 30 100.0 35 .............................. ACACCGTCCCTAGGTGATGTAATAAAATTATATGA 73484 30 100.0 35 .............................. TACCGTATGTACAGATACACCATATTCTGCTGCTA 73549 30 100.0 35 .............................. TCGTTAACAGTGTTATCTGCCTTTTTGACCTTGTG 73614 30 100.0 35 .............................. GTCAAACGGCATTTTATTGACTAGTAGGCAGTTCC 73679 30 100.0 38 .............................. TGTGCAAAACCTTGGCTGATATAAGCACCTGCAGCATG 73747 30 100.0 36 .............................. GATGATGTATTTGTTTTTTTTGTAAGCTGATTTAAT 73813 30 100.0 35 .............................. AAAGAATATCTGCAAAAAATACGCTATATTGCAGA 73878 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 99.9 36 GAATTAATAGATACATTATGGAATGTAAAT # Left flank : TCGGAATTGTTGAAGTAGATAGCATTCTGTAATAACAAGTGGAATGTATAGATTAGGAAAATCCAAAATGTAGCGGTTAAAAGAAAGTTTCAAAATTAAACTAACCTTTACATTCCAATATGTTATTACTATAAATTTATATTATAGAAGAAAATAATTGAGATGACAATATATTTAGGATTCTAATTGATGTTAATATAGAAAGAAAAATATTATTCCAGTTAGATTAATATTGTAAAATGCTGAGATAGATGCTATAATGAAGCTACAATCTTGGTGAAAGGTAAAGTGTAGTCTATTAATAAGATTTTTGTCTATGTAGAGGTAATAAAAATTGTCGACCAGTAATGATGTGAAAATATAGGAAGGTCGACAATGGGATAAATATAGGCTGAGAGCGAAATTATAATAAAAATATGGATATAAGATGAGGAGAATAGAAAGAGGTCGACAGAAAAAGAAGAAAGACTATAGATGATATAATGGTAGTTGGAGGACGG # Right flank : GATAGAACATAATAGTAAAGAATAAATTATTAAAGATGTTTATAATCCTTTAGAAAACTAAGCGAGAATTCTCGGTAGTTCAATTACCGAGATAAAAGTGTTTGTTTTTGTATATAGCTGAATGCTTTTTTTGAAAACAAAAATATGTTCGAAAAAATATTGACTATATAGTAAAATAATGGTATATCTATATGTATAAAATAAAGTCAGATATATTTTATCCGTGCGAACTGGAATCTCCATTGACGGAATAGTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGATACATTATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 41752-41520 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQO01000003.1 Anaerobutyricum hallii strain AF31-17AC AF31-17AC.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 41751 33 100.0 34 ................................. TTATCTGCTTCAAAAGTTCCCCTTGCTTTCGCCT 41684 33 100.0 33 ................................. CTATAAATTTTGCGCCACGAGCATTAACATCCA 41618 33 97.0 33 .............T................... AGAGAGAGGAGAAACTGAAATGAGAAAAACAAG 41552 33 90.9 0 ...................T...........CC | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCATCCCTCGCGGATGCGTGGATTAAAATT # Left flank : GACAAACCATACTTTTTCGGGGAAGAGGGTGCACCGAGGCATATATAAAACAGACAAGGGTCTTTTCATCAATGCCGATATCAATGGAGCAGGGAACATCCTGCGTAAAGAATATCCATATGCTTATGATGGACAGGAACTAAGCTATCTTTATGAGACAACGAAAGTGGTATCCTATACTGATATCTACATTGGAGCGAAAAGCCTGTGTAACGAGAGATATACTGGTAAGAATCATCAGTCAGGAATAGAGAATGTGAACCACCAAAAAATTTTCTACAGAAAAATAGAGTGACTTCAAATTCTGACATACTATATATGAGAAAGTTGGTGCGAATCGGAAGTAACGCAAGAATCCCGGGAGATTTGCACTACAAAAACAAAAAATATTGTTCTTGCTTTTCTAAAAAATAGAAATGTAAAAAGTTACAATATCAAATTTTTGTACAAACTTTCTAAATAAAACAGTGAAATTGTTACCAATTTTATATGATTTCGCT # Right flank : CCTTCATATGTAATTAAAAACTCTTTTAACAAAATAATATAAGGATTCCCCCTTCCTCAACATCAGTAGGTAGGGGAGGAATTATCTAAAATTCACTAAGCGTCAGTGGTGGGCGGAGAGAGAGTGGTATCCACCACTGACAAGAGACTTAAGCAACAGTCGGATTTTCCCGATATTCAGGCTCCGTTAAACTTATCGACTGTGGATTAAAACAATTGTTGTTACTACGACCATTACGATGTCGCACCCCTCACGGGTGCGTGGATTAAAATGACGGTAATCAGGATAAAGAAACCATCATTATATTATAGGAAGGAGGACCGTCTGAAGGCGGTGGCGAGTTTCCTTAAGAGAGAGAAAAAGGATTTTCGCTTAAATCTTGATGAAAGCATACGGATTTATACATACACATTCAGAATATTCATTAAAAGACGCTCCTCTAAAACTTGCGGATATTGTAAAAGAAGCAAAGAAAATGGGAGCTACAGCTATTGCTCTTA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTAAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3951-4311 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQO01000006.1 Anaerobutyricum hallii strain AF31-17AC AF31-17AC.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3951 33 100.0 34 ................................. AAAGCTACAAATTTCTTTCCGGCAAGTAAGGAAG 4018 33 97.0 31 ................................T TGCAGTTCAGCAGATGATAAATCAGTGATAC 4082 33 100.0 33 ................................. TTGTCAGCCTCACTTCCCCATCTCTTACACGCT 4148 33 93.9 32 ...............................CT CTGCAAGGGTGTTGATTTCTTTGTAGCTACTC 4213 33 97.0 33 ................................A ATTGTACCCAAAACTTCTAAAACTTTATCTCTT 4279 33 84.8 0 .........T..A...G..............AA | ========== ====== ====== ====== ================================= ================================== ================== 6 33 95.4 33 GTCGCATCCCTCGCGGATGCGTGGATTAAAATG # Left flank : GAAAAAGAAAAACTTGACCCGAATTGCAGAAGAGATGGGAGTCAGCAGCAACTACATAGGCCAACGGAGAAGATACAGTCTGCGGAAACTTTATCAATATAAATGCTGTGCCTGCCTGCTGCCAGAATACAAAAAACTTCGGAAAGATGTCCGAGAATATGGACAGATGCAGGAAATACAAAAAGAAGCTTACACAAGGGAGGGGTAGAAACATTGTCCGAACTCGCTGGCTACAGCAAAAAGGAAGTGCTTTCTGTCCGACTTTTTAAAAAATATTCTACAGAAAAATCAACCAATCTCAAATTCTGACATACTATATATGAGAAAGTTGGTGCGAATCGGAAGCAACGTAAAAATCCCAGGAGATTCGCACTACAAAAATAAAAATATTGTTCTTGGTTTTCTAAAAAATAGAAATGCGAAAGATGACAATGCCTAATTTTTGTATAAACTTTCTAGATAAAGCAGCGAAATCGCTATCAATTTTATATGATTTCGCT # Right flank : ATTCCTAATCTGTCATACTATAAGGGAAGGGATAATATCCCTTTGTTTGCGGGGCAGGCAACGGTCCAGTCTGTCCCGTATACTACCAATTAAACAAATCTTTTGCAGAGCAGGAAAGGAGTTTGCTATGATACGTTTTAAACAGGTCGTATCCGGTGTACTGACAGGCTTTTTATTCTGTGGTTCTGCCATCAGTGGAGCACCACTTATTGCAGCAGCTAAAACAGAAACCACATACAGCCTGACACTCGATAAGACAGAAAACGGTTCCGTTGCTATCTTTGATGCAGAAAAAGAGGCAAAGAAAGATGAGAGCAAGGAGCAGCAGAACACAGAAGCTACTACAAAAGAGAAAGCTTTAACCAAAAAGGTAAAGGCTGGTGATACCGTAGCCATCCAGGTAAAGCCGGATGCTAAGTATATCATCAAAAAGCTGTCCCTTATTGATCCTGAAACAAAAAAGAAGCTGGATGTTGAACTTTTTGCTGATGAAAAGCATG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGCGGATGCGTGGATTAAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //