Array 1 857431-856478 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019755.1 Nitrosomonas stercoris strain KYUHI-S chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 857430 36 100.0 33 .................................... GATTCTTTCTATTTCATCTGCCAGGTCTATGAT 857361 36 100.0 36 .................................... ACTGTTCAAATTTAAACATGATGTTATCTCCTTTAG 857289 36 100.0 35 .................................... AGGCCTAAGTTGACTTCTTCACCCTGTACTTCTAC 857218 36 100.0 35 .................................... CTCTCTAACGTGCTGCAGTAGCTGCTTTTGCGCAC 857147 36 100.0 37 .................................... TTATTAGGCTCTTGGTTGTTGTTGGAATTACTGTTAG 857074 36 100.0 35 .................................... CCAGACTATCTAGTGGTATTCCAAGAGGCAACGTT 857003 36 100.0 35 .................................... AATCGGTGATTCTTATTCCTCTGAACCCTTCCGGT 856932 36 100.0 34 .................................... ATTTTCATCTCTATCTCCTTGTGTTGTTGATGTT 856862 36 100.0 34 .................................... GATTACGACTTTACAAGGTGCGCCGCTTTCACTA 856792 36 100.0 34 .................................... GACATTTATAAATAATGATGCACAAGTATTATTA 856722 36 100.0 31 .................................... CAGAACAATTTATATCGCCATCGGCCAATGC 856655 36 100.0 35 .................................... CCGCGCCGGTACTCATGTATTTGGGAATCTTCGCA 856584 36 100.0 35 .................................... GTGATGAACAACAAGTTGGTTCATTGCGCTGCTAC 856513 36 83.3 0 ...........................AGC...ATA | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 98.8 35 GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : GCTATGACATTACCCATCCGCGCCGCCTGGCACGTCTACATCGCTATTTGGTAAAACGTGCTGTTCCACTGCAATATTCCGTTTTTTTATTCAATGGCGATAATCGTCAACTTGAGAATTGCATGCAAGGAGCAATTGAGCTGATTGACGAGAAAGAAGATGATTTACGTGTTTATCCATTACCAAGTCGTGGATTGAAGGCTCGTATCGGTCAACCGGCTTTGCCAGAAGGTATCCAGTGGAGTGGGTTGCCCACGACATGGTAGCGTTGTTTATTTGCCGCTAAAATGGGCAATCATTTGAAGAAAGAGCAAAAACAGCCGCAGTTCACACTTATAAATATGATAAAAGCGTTCAAAATACAGGAGAATAATCTTGAATTATTCGAATTTTATCAATAATGAAATTTGATCTACAGAAGATACCTTGCAACACTGCGCCAATTTTCCGCTAAGCCCTTTGCAATCTATTGATTACAAAGAATAAAATGATAGCGATCG # Right flank : TGACGTACTTGCTGATAAACAAGGGTGAAATATGTCGATAACGCCAGATCGTTACAAGGTGTTATTCACCGGATGTTTTCATCTGCTGTCAGTGAGTGTATGGTGCCAATCAGGGTAAACAGCCAGACCAGTAAGGCGAACCAGCACCAGTAAAAGGAGATGGATTCAAGAAAATAATAGCCGCTGGTGTTTGCCAGGGAAAAGGTGCATGCCGTATACATGCCGGCGGGGAACACTCTGCTCCATGCTTCGATGGTGTAAATGCGATATTTGCCGCGATATGCTAATCGTATCCAGGGAAATATTGTTATCCAGAGAGGAACGCTCTGCTTTCCAGCAAGTTTCTGTATATCCATGACTAACAGATAAGGAATCCACAAGGTACCGAGTGCCCATGCAAATAAGCTGATTGTCAGTGTGATTTGCTTCAGGTTGACACCCAGGGAGCGAGGTAAATGTGCGAGCAATTCCGAACCGGCAAGTGTAATAATGGCAAGCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 871927-872939 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019755.1 Nitrosomonas stercoris strain KYUHI-S chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 871927 36 100.0 32 .................................... ATCAATAGCTTTATGGGCTTCTACGTCATTAA 871995 36 100.0 33 .................................... TGTTCGAACTTAAACATGGTTATCTCCTTTAGA 872064 36 100.0 33 .................................... AGTTGTTGCTGCTTGACTGTTCGAACTTAAACA 872133 36 100.0 33 .................................... ACTCAACACCAACGTTAAGCCACAGTTTACTAG 872202 36 100.0 34 .................................... AATTACATATATTTAAGAGAGCTAATCCATCTGT 872272 36 100.0 34 .................................... CTCTGCCTCAGCTAATCTTGCCTTCTCAGCATGT 872342 36 100.0 33 .................................... TGAATTCTACACCAACATTTATCCATAGCTTTG 872411 36 100.0 35 .................................... GTATTAGGGTTCCATAAGATACCTAAGCTAGCTTC 872482 36 100.0 35 .................................... TTTACCTTTCATAGTGATATCCTCCTTGCTTATGT 872553 36 100.0 35 .................................... GAAAAGAACATAATTTATTCTCCTATATATTTATT 872624 36 100.0 34 .................................... CATGTCTTTCTCCTTGTGTTGATGTTTATTATTA 872694 36 100.0 34 .................................... ATTCAAGTATTACAGTCCTATCTAAGAGATTAAG 872764 36 100.0 35 .................................... ACATCTCCTCCAGCCCTTCCGATGGCGATAGCTTC 872835 36 100.0 33 .................................... AGCTGAAGGGCCCAATATTGAGTGTTTGCTCAT 872904 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 15 36 100.0 34 GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : CAGAAAGCCTGGTGTAGGTATACCTTGTGACATAGGCAACATCCTTCGCTTCTTCAGCAATCGGATCTACCTGACAGGACGCTGCAAAACCAAACATATAAAAATTACTCCGGCTAATAGAACGAGATGCATTGTGTATCAGTTACTAGTTGACAGGTGTAACGGCAAGCTTGTCGAAGAAGATGAAGATGCTCTTACTAGCAATAACAGAAATAAATGCACGAATACCGGGGAAAGATGACAGCACTTCGGAAAATCAGACAGGCAGGAAAAGCAGTAGCATTTACCTGTTTTCTCGAAAATCCATTGATTATTGGAGAATGACAAAATCGCAAGAGGAAGCCTGCAGCCTATAGAAAAGTAGCTGCCGGCCGCATGATAAAATTGACTGTTCTTTAAAAGAAAATAGGTTTTGAAAGAGACATCTTGCAACGTGACGCTAATTTTCCGCCGCACCCTTTGCAATCTATTGATTACAAAGAAAAAAATGATAGTGCGCA # Right flank : CATGGTGCATGTTTCCTGCCTCAATCCACAACAAATACACTCATAGAGAATTGAACAACACCGTCCCAAGAGATGAAGAATCAGATTAAAATTTCAGGTGTTGCACTAAAATTCCAGCTAGTCACTCCATCGCTATTTATATTGACCAGCCTTGTACAATGAGCATGCATGACAATAATGTTCGTTGATCGGCTTCTAATCGTCAAAATAAAAGCTATTCCCAAACAATGATTTAGTCATTTGTTCACGATCGCGATTGTCTATATTGCTTGTACCTAAATAACACCTATTCTATTTATTCTTTGATTTCCAACATGGCGCTTGATCAACCTCACTCTTCTCCGCGCGCACCTTCGTTGCCACGTGAACCTTTTCCTTTCTTATTACATTTTTTTCGGCATTACACTGGTTGGTGCGTGCTGGTGGTATTACTAGAAATTGGTTCTTCGGCTAGCGGTATTTTGACGCCCTACGCTATTGGTCAGATTGTCGGTGGGGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACACTAATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1469563-1468437 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019755.1 Nitrosomonas stercoris strain KYUHI-S chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1469562 28 100.0 33 ............................ TCGCAAAGATACATGCCAGCAGGGTGATGGTGA 1469501 28 100.0 33 ............................ TCAACATATCTTACAACAGTGGCTTATCCGGCT 1469440 28 100.0 33 ............................ TGAGGCATATATAGCTTCTGTGGAGCAAGTGTT 1469379 28 100.0 33 ............................ CTCTACAATGCTGAAGCTTCTGAATGCTGGAAA 1469318 28 100.0 33 ............................ CAGGAGTGATATCCGCCCTATGCCTTGCGCTTA 1469257 28 100.0 33 ............................ TCCCCAGTCTAATCCAAAGTATGGCCCACCCCA 1469196 28 100.0 33 ............................ TTAGGATTGCTTGCGCATCAATGCGCCCAAGAC 1469135 28 100.0 33 ............................ CATACTCTGGCGTGTGGGATGGAACATTTAAGA 1469074 28 100.0 33 ............................ CAGGAGTGATATCCGCCCTATGCCTTGCGCTTA 1469013 28 100.0 33 ............................ TCCCCAGTCTAATCCAAAGTATGGCCCACCCCA 1468952 28 100.0 33 ............................ TTAGGATTGCTTGCGCATCAATGCGCCCAAGAC 1468891 28 100.0 33 ............................ TGCCCCGCTAACAGGGAAGAGGCCAGGCTGACT 1468830 28 100.0 33 ............................ TAGATGAGCCCGTTTGACTAGCTAGAGTGGTAA 1468769 28 100.0 33 ............................ CCTGCGAGATGTCACCCAATCGGGTAATATGCA 1468708 28 100.0 33 ............................ CATCCTTCCTGTCAAGGAAAATTTTTTATTTCC 1468647 28 100.0 33 ............................ CATACTCTGGCGTGTGGGATGGAACATTTAAGA 1468586 28 100.0 33 ............................ TCCCTGGTTCACATACCTCTGTAAAGGGGTATT 1468525 28 100.0 33 ............................ TATGGAGTTTGAGCGATATATACAAGGGCCTCA 1468464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 GTCTTCCCCACGACCGTGGGGGTGTTTC # Left flank : TATATAAAGAGCATCTCTGTATAGATCTTGCCTTTGCTTTAACCAAAGACATGGCGGGCATTTATAACAAACATAAAGTATCGAACGCCTTTAGAAAACGCGTGATTGAAATGGATTTACTCGCGAAAATTCCAACTGACATTCAAGAAATACTAGGAGCACCCAATGCTCGTCGTACTCGCAAATGATCTACCGCCAGCTGTGCGAGGTCGCTTAAAGCTATGGTTTATTGAACCGCGCCCTAATGTGTTTGTATCAGGAGTAAAAAACTCCGTAGCTCAAACCGTAGTAGACTACCTTTACAAACACTGTCCACCCGAATCTGGTGTAATTATTTTTCGCTCTATTTCACAACCACCTGGCTACGAAGTACGCACCATCGGTCCACCAAGGAAACCAACCATTGAGATAAGCGGCTTGCAATTAATTATTGAAACTCTGAAAAGTTAAGAAACACAATTTGTAGTGTTGAACTTGATGTTCTTTAACAACATATTGCT # Right flank : TTCCTTTAGCTTTTTCTAAGAGCCTGTTTACAATCTCGATCAAGGGAGGTAGTGCAAGGCAAAATTGAACAAGAAAGCGGAGCATACTCGAAGTATGTGAGCATTTTGAGTTCGATTTTAACGCCGCAATGCGCCCTTTAGTGGGATCGTGAACAGGTTCTCAAGCAAGGAAAAACTGATAGGCAGGGTTATTGCTCTCATCTTCAAACTCATAACCCAATTCTTCCAGGAAATGCATGAATTCCTCTTTTTCCTGGTGGGGTATCTGTATCCCAATTAAAACACGGCCAAAATCAGCGCCATGGTTACGATAATGAAACAAGCTGATATTCCAGCGATCGCTCATTTTGTTCAGAAAATTCATGAGTGCACCTGGGCGATCCGGAAATTCAAAGCGATACAGCACTTCATTACTGACTCCTCGCGAGTGCCCTCCCACCATATGGCGAATATGTAGCTTGGCCATTTCATTATCTGTCATATCTTCTGCACGTAAATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGACCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //