Array 1 306000-303406 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATR01000012.1 Plesiomonas shigelloides strain NCTC10364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 305999 29 100.0 32 ............................. TTTACTAGGGATCGGCTAAGCGAGGAACGATA 305938 29 100.0 32 ............................. CAATATCAAATTGATGCTGGAATAGTGAAAAC 305877 29 100.0 32 ............................. TGTGGCATGAGCGGGAATGGCAAATGACGGCT 305816 29 100.0 32 ............................. TTAATGAACCGGTAGGTGTGCGGGAATTCCGA 305755 29 100.0 32 ............................. CGTGTACTGATCGTTAAGCTTGCTGACATGCT 305694 29 100.0 32 ............................. GAGGAGGCAATACTTCTTCGCCTGATAAATTG 305633 29 100.0 32 ............................. TGTTAGCGGTAATAATGGTAAATTCCATAACC 305572 29 100.0 32 ............................. TACAGCGTTTCTCCTTGCTTCAAACCATCAAT 305511 29 100.0 32 ............................. GCATGGGATGCGTGGGGGGTTAATAGGAAAGG 305450 29 100.0 32 ............................. ACCGGGAAATCATTCTTTGGCATGGGGTTTTC 305389 29 100.0 32 ............................. AATCGGATAAATGATGTACTGATAGGCTAATG 305328 29 100.0 32 ............................. GGACAGGGGGAGGGCTTACCCGGTCAGCATCA 305267 29 100.0 32 ............................. ATGAAAGCGTAAAGCGGATTACTCGCGTTATA 305206 29 100.0 32 ............................. TCGTGATGCGCCTTGGCGCGGGGGCCGCAACA 305145 29 100.0 32 ............................. CATCATCAACGGTACGATTACGCGCGATGACT 305084 29 100.0 32 ............................. AGAGATTCACCCCGATTAAAGCAATGCAGTCT 305023 29 100.0 32 ............................. GCTGATTTGTACTTTTGCGGTTTCATCCTTAA 304962 29 100.0 32 ............................. CACGTGTAACGGCGATGTTATGGCCTAAAATT 304901 29 100.0 32 ............................. CCATTCAGATGACTTACTGAATCAGTCAATCG 304840 29 100.0 32 ............................. GTTTATCGCAAGTATCCGCAACTGAAACGCAA 304779 29 100.0 32 ............................. CATCAACTTCATCACCAAACACGCACTGTTTG 304718 29 100.0 32 ............................. TGACCACATCAACAATGTCCTGATAGGACAAA 304657 29 100.0 32 ............................. GTTAGGCAACTGCTGGCCATGCCAGATTGGGA 304596 29 100.0 32 ............................. CTATTGCTGCAGCTGGCATTGAGTTCGACCAG 304535 29 100.0 32 ............................. GTCGAATACGCCAGATAGTGCCTGCGCGGTCA 304474 29 100.0 32 ............................. CCACACCAGAACAACCAACGACCGCTAAACCT 304413 29 100.0 32 ............................. TTCCACGCCATGTGTCGCGATATGGCTTTGCA 304352 29 100.0 32 ............................. GGTGATGCACTGACGCTTTGCAGCCCATTCCC 304291 29 100.0 32 ............................. ACCTGCAGACGTATAATATGTCTGACATGGCT 304230 29 100.0 32 ............................. AGAACGCCTACCGCGAACTGCTGTTGCGTGCT 304169 29 100.0 32 ............................. CTCGCCGAACGCCAGAAGAAAGCCGTTATCGA 304108 29 100.0 33 ............................. CGTACTTTGATCGCGAAATTGCGCCGGTAGAAA 304046 29 100.0 32 ............................. TGTGGTCAGGGACGTCACCGGTTAACGTGGAA 303985 29 96.6 32 .....T....................... CATTCACTAACATGGATTCCGGCGGGGAAAAC 303924 29 100.0 32 ............................. TCCGCATGTAGATTATGTGGCCAGTATCGCTA 303863 29 100.0 32 ............................. TCAGCACCCGGCTCCCAGAACAGGCTCATCAT 303802 29 100.0 32 ............................. TTCGTCTAATCAATGCCGACAGCCTGGTATAC 303741 29 100.0 33 ............................. AATCAAGAAGGTTTGCTGTTCGAGTACGGGATC 303679 29 100.0 33 ............................. GCGATAACTTCACCGTCTGAATTAACCACACGC 303617 29 100.0 32 ............................. GTCGGCGGGGTAATGCTGATTGATGACTATGA 303556 29 100.0 32 ............................. GATGATGGCATCGTGCTGATGCTGCGCAAGAT 303495 29 100.0 32 ............................. ATGGGGCAATTAGAAAGCATGTTCAACGAGGT 303434 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.8 32 GTGCTCCCCGCGCCAGCGGGGATGAACCG # Left flank : CCGTTAATTGAAGATGTACTCGCTGCCGGAGGCATTACACCACCTGAACCGCCCAAAGATGCCCAGCCGCCTGCAATTCCCGAACCGACAGGTATGGGGGATGTCGGTCATAGGAGTCAATGATGAGTATGCTGGTTGTGGTGACTGAAGATGTCCCTCCGCGTTTGCGTGGGCGGCTTGCTATTTGGCTACTGGAGGTGCGCGCGGGTGTCTATGTGGGTGACGTTTCCCGCCGAGTGCGAGAGATGATTTGGCAGCAGTGTGAGGCTTTGGTCGAGCAAGGCAATATCGTAATGGCATGGCCCTCCAACAATGAATCGGGGTTTGAGTTTCAAACTTTAGGCTCTAACCGAAGAGTTCCGGTAGATTTGGATGGCTGTCGCTTAGTCTCATTTTTACCTATTTAAAATTAATAGGTTATCGTTCATTAACAATCTGGATTTGTTGGTGGCTTTTTTATGAATTGAAAAGGCTATTTAAATCAATAATATCTGTTAAGA # Right flank : AACTCACCTAGTGGTTATCTAGCGATTCCCTGAGCTATTGCCAATTGCAAGCACATAGAGCGTTGCCGGAGGGTTCTCGATGCAGAGCTAAATAAAAGGTCGATAGTCTGTTCGACGTAGTTTTGTGCGGGGTGAGGAAAACCATATGTCGCTAGCGATAAGAACAACGGAAGTTCGAGCTCATCCGTCGGTGATTGAGGAATAGCAAACATAGTGGGTCACCAGGCATTGTAAATGCACACAATACGCGACGCTGTGACTTTCAGATACAGAAGCACTCCGAACTTTCTGGGGGAGCTGTTTATCAATGTTTGAGTTGAGGCGATTTGCACTCAATGAACATATTTCTCTAAAGGCATATGTGAGAGAAAGGAGAGTCGCTTCAAACTTTGAGCAAAATGTTTATATGTGGTCTATAGCGTGTCAGCTGTTGGGCCCTGTGTTGGGCCCCAAGCTAAAAATAGGCTTTTAGCACGATGAGATGTTGTTATAACTTGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //