Array 1 123376-122798 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVR01000014.1 Streptomyces flavofungini strain JCM 4753 sequence14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123375 29 100.0 32 ............................. TCTGGAACGCCGTAGCCGGAACGTTCGGCGCC 123314 29 100.0 32 ............................. TTCGGCAAGAACTTCAGCCAGATCGCCGGAGA 123253 29 100.0 32 ............................. GGCACCTTCACCGTCTGGGGCACCGCCCGCGA 123192 29 100.0 32 ............................. GCGATCCGCTGCCGACTTTCGCACACCGGATA 123131 29 100.0 32 ............................. GAACTAGTAGACCATCGGGACGGAGTAAAGAC 123070 29 100.0 32 ............................. GGCAGCCTGGTCACCACCGGGGACAACACCAC 123009 29 100.0 32 ............................. TGGTGGCTGAAGGACATCACTGACCCGGGCGG 122948 29 100.0 32 ............................. TGGCTGGCGGTCGGGAGAACGACGGACGGTTC 122887 29 100.0 32 ............................. GCGACCATGCCCAGCACCAGGAACGGATTGGT 122826 28 93.1 0 .....................-...C... | G [122801] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GCCGAGAGTTGGCGCTCTACAGGTCGTGGCTCGCGGTCGCCCTGGCTGACGCCAACGAACCCGAGCAGGCAGCGGCCGAGGCGCAGCGTGTCATCGCCCTGTCCTGCGATCTGTCCTCGGACCGAACCACCAAACGTGCCCGGGTAGTTCTGGCACGGCTGCAGGAGCACGCGGCGGTGCCCGAGGTCCAGCACGTGCTGTCCAACTACGGGCACTTGCTGCGGTAGTGATGCGTGGCCTTCTCTTGGACGTGCGCGAGGGGGTCTATGAGGGCATGGCCGATGAGCCCCAGGGCGCCGTAAGCAACTCCGTGGGGCACCAGGGTTGTTGTGGGCCTACGGTGGGCGTGAGGGCGCAGCGCCACACGCTTGCATGCAGGCGCCGCTGGCTAAGCCCTTGCGGGAGTTCGCGCGCTTAGTGGTTACCTGTCCGGAATGCCGGTATCTAAAGAAGTGAGGGGAAACTGGCTAGCGGCCGGGTAACGTCCCAGGTCGCGGCCT # Right flank : TGCGAGGTTGCTCTGCGTTCGATGCGGCCTCGTGAACGATCAGACAGTGACGGCCGCCCCGTGAAGGGTTGGGTGAGCCGGGACTTGGCGGGTCCAGGGTGCGGATCTTCAGTCAGTGCCACGAACGCTCGTGCAGGATGCCGGTGGCGACGTTGTGGATCCCCCAGTTCGGGATGGCCTCGCCCGGGTAGGCCCTGGGAAGCCGTTGCGGTCCTTGTGGCTGAGCCGACCTGTCGTCGCCGTGCGGCCCCGCTGGTGGCCGCCGGGCGTCAGTTGGGCACGACCCGGCCCCGGTCGAGTGTCACGGTCTCGTCTGCGGCTGTGAGGCCCGAGTGGGCGTGGGTCACCAAGAGTGTGGTGCGGCCCCGGGTCGCGTCGAGGATGTCGGTGAGTACGGCGGCTGCGGTGTGCGGGTCGAGGCCCTCGGTGGGTTCGTCCAGGACCAGGACGGGTGGGTCGGCCAGCAGGGCGCGGGCCAGGAGGAGGCGGGTGCGCTGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 291039-290358 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVR01000005.1 Streptomyces flavofungini strain JCM 4753 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================== ================== 291038 28 62.1 107 .CATC.A....G..GA.T..T.-...... TCGGCCAACGCCCCCAGCATCGCCGTCGCCCGCCGCCTTGGCATGACCCGTGACGGCGTTCTCCGGGGCAGCTATCTGTACCGGGGGAAGCGGCATGACCAGGAGAT 290902 29 55.2 62 C.....GGT..TC.C..C..A....CGGG AGGCCAAGTCGGCGGCCGCGCCAACGGGTTGAGCCCGGGGCCGGGCAGGGTCGGGGCCGCCC 290811 29 82.8 32 ............CAC......T..A.... GTCTTGAGGCGTGGCTCGTCGGCCAGGATGTT G [290800] 290749 29 100.0 32 ............................. GTGAAGGACTTCGTAACCGGGTTGATCCCGGG 290688 29 82.8 32 ...........GCC..........A...G ATGACGCCCTTCGAAATGCCGGGCCGGATCGG C [290678] 290626 29 100.0 32 ............................. GGCACGTTGCCGATCGCCGCGTCGAACTCGCC 290565 27 89.7 32 ...........--.C.............. GGATGCACAAGACCTAAGGTGGTTCGCCCGTT 290506 29 93.1 32 ...........GC................ TCGCAGACCGGCACGCCCTCCCAGGCTCCTGA 290445 27 89.7 32 ...........--.C.............. ACCGACCCGGACCAGGTGTACGAACAGTGCCT 290386 29 86.2 0 ............CC.......C...C... | ========== ====== ====== ====== ============================= =========================================================================================================== ================== 10 29 84.2 44 GTGGTCCCCGCATGTGCGGGGGTGGTCCC # Left flank : ACCGCGACCGCCGACGCCACGACCACTGACACCACGACCGCCGACGCCACGACCACTGATAATGAGCCGCAAGCCGCGGTGCCGGACACCGCGGAGCGCGGGGAGAACGGGGAGGGTACCGATCATGTACGCGATATCTCTGGGTGCCGACGGCGCGGAGCTGCGGCCGTTGGAGCCCTGGCAGGCCGAGGAGTTCCTGGCCCACATCGACCGGGGGCGGGAGTTCATCGGGCAGCACAACGGCCTGCCCGACGTGGTCCACGACCTGGCCTCCAGCCGGGCCTACCTCAAGGCGTACGCCGACAAGACCGCCACCGACACCGGCCGGATCTGCGGCATCCACCTGGACGGCGAGCTCGTCGGCGCGGTCATCCTGCGCACCATGGACGTGGCCCGGGGCACCGCCGAGGCGGGCTGCTGGCTGGAGCCCGCGGCGGCCGGCAAGGGCCTGGTGACCCGGGCCGCCCGCGCCCTCATCGACTGGGCCATCGAGGAGCGCG # Right flank : GGCCTCAGCTCGACGGGCGCTCCGGGACCCCACCAGGCGAGACCGCCGCACCTCCCCCAGAGACCACCCCGGACTCCCCACCCCCCACAGCCCCAGCCCCGGCCCCAGGCGCAGGCCGCACCTCCGCCAGCGTGCCCACCAACGTCAGCACCACCGTCAACCCCACCCCCGCCAAGATCGCAGTCGACGGCGTCGTGACACTGAGCAGGCCCCCGGCCAGCGAACCGCTGACCGCGTACCCCGCCCCGATCGCCGCGTACATCACGGAGTACCCCGCGGCCAGCGCGCTCGGCGGCAGGACCTCGCGCAACGTCAGGTTGCGGGTGAGCATCGAACCCGCCTGGAGGAAACCGGCGCAGGCGAGGCCGACCGCCAGCCATGCGGCCGTCGGCAGGACGGCGACCACGGCCAGGCAGCCGCTGACGGCGAGCATGCACACCAGGCTCTGGGTGCGGAGCCGTCCGGGCCACTTCCGCAGGCCGTACACGAACGAGCCGACC # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.21, 5:0, 6:0.25, 7:-0.90, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCATGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACATGCGGGGGTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 314050-313899 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVR01000005.1 Streptomyces flavofungini strain JCM 4753 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 314049 29 100.0 32 ............................. GGTCTCCCGGCTTGACACGGGCTACGGGGTGA 313988 29 100.0 32 ............................. GGAACTGGTCGTCTCGCCGCTCATGTACTCAT 313927 29 86.2 0 .......................CTCA.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CCGCCTGCGCGCACTGCTCACGCTCGCCGAAGCGCTGAAGGCGACCGAGTCATGACGGTCGCCGACGACGTGACGGCGCACGCGGACGAGCTGTACCGGATCCACCTCCGCCACCTCGACGACTGCCAGACCTGCCGGACCCAGGACGACTGCGAACGGGGCACCCGGCTGCGCCGGGCCGTACGCGCTGCACGCCTCACGACCGACGCAAGGCCGCGACGAAGTACCACATAGCCTGCCCCGCCCAGCCCGACGGCCACCTTCCACACCCCTCGGGTTGGCGAGGCCTCACCAACCCACATCGCCCGCTGACAGGTTGCCCCACACCCCTACAGCAGCCCTACAGTTACGCCGACGTGGCGTCATCCGGCCTCCGGGCCGACTGGGAACAGTGCCTTGCCGGGCATGCGGCGATCTGAGGATGAATGGCCGATATGCCGATATCTCGCAAAGTAGGGAGAAACCGCGAAACGGCGACATGAAGCCGCAGGTCACGGCCT # Right flank : GTTGCCCACTGGTTCTCGTACGCGGCGCGCGCCGAAGTTCCGCCCTGGCACGCTGCTGCCTCTCGTCGGGTACGACCCCCAACCGGCCACAGGCCTGTGCCTGGTACGTCTCCGAACTCAGACGAACCCCTAGGTCTGCGCGACCCCGATCGTGGGCGGGGCCGACGCGTACCTCCAATGGGTCCAGTCGTCCACGACCGCCGACTAGACGCGGGCCTCATCCAGCAGCTCGGCGACCGCTGCCAGCGCCGGTATCTGGCGGCGGACAGATCGGCGATGACCGACGCCAGACACCTCCGCCCTGCTCCGGGAGAGCGGAGCCGTTTCGTCACTCCCGCCCATTGACGTGAGCCGTACGCTGGCGAGACCGGCACCGCCAGACGAGGGGGCAGCATGGACATCCAGGACGACCTCAGCATCGGCGAGCGGATTCGGGTCCTACGCGAGTCGCGAGGTATGTCGCGCCCCGGTCTGGCGCAGCTCTGCGGACGAGGCCCCGA # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 317778-317380 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVR01000005.1 Streptomyces flavofungini strain JCM 4753 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317777 29 100.0 32 ............................. CTGCCACAGATCGCCGCTGACCTCGCCGTCGG 317716 29 96.6 32 ...........A................. GTCACCTCGGTCTCGGAGAGGTCACCGACGTC 317655 29 100.0 32 ............................. ACTACGAACCGGGCGCGTGTGCCACTGAGACT 317594 29 100.0 32 ............................. AGGCCGCCGTCACCGCCGAAAACCAGCGTGTT 317533 29 100.0 32 ............................. GGCTGGCAGAGATCGTCCAGGAAGTCGATGCG 317472 29 100.0 32 ............................. CTGGACGCCCTGCGTCTCGACGCACAGCTTCC 317411 29 86.2 0 ................G..A..C...G.. | C,GT [317388,317398] ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CTCCGCACTCCTGGCCGTCGCCCCCGCCCCCGGGACGCAGGAACAGTGACCACCCCGGACCACACCACGACGCACGCCGTGGCAGACGAGCTGTACCGCATCCACCTCCGCCACCTCGACGACTGCCAGACCTGCCGGATCCAAGGCGACTGCGAACAGGGCACCCGGCTGCGGCGGGCCGTACGCGCCGCACGCCTCGCAGACGGGGCGAGGCCGCGCCGAGGCACCACATAGCCTGCCCCGCCCAGCCCGACGGCCACCTTCCACACCCCTCAGGTTGGCGAGGCCTCACCAACCCACGCCCCCTGCCCGCGAGTTGCCCCACACCGCCACAACAGCTCTAGAGTTACGCCGACGTGGCGTCATCCGGCCTCCGGGCCGACAGGAAGCAGTGCCTTGCCGGGCATGCAGCGATCTGAGGGTGAATAGCCGATATGCCGGTATCTCGCAAAGTAAGGAGAAACCGCGGATCGGCGACATGAAGCCGCAGGTCACGGCCT # Right flank : GTTCCGCCTTCGGACGGGGCGGAGCGGACGACAACAGTGGCGTGGCCTCAGCGCTGATGTGCGATGGGGGCGATGACCGCCGGCGACAATCGCCGTACTCGTAGGGGTGATTGGCGCTGGGTCTGGCCTCTTCGCGCTGCCCGCCCGCTGAATCGCCTCGCCCCCCGCCTGCCTTCGGTCGGGAGGGGCCCTTCACTCTTGGTTCGTCAGCCTCGGCGTGCCGCGCCCTCTGGCCACACAACATCGACGACAAGCCCCTCGGCGCGCGCTTGCTCGACTGTGTCGGACGTGCCGCCCCCCTTGCCGGAGGGCGGAGTACCGTCCCACACCGCGACGAGTCGGTCGCCGCGGCGCAGCAGTTCGCCGTTCGCCGACTCGTACGCCTGCCGGTTCGCAGTCTCGTGCGGCATGACGACGACTTCGGTGGCCGCTTCGACGAGACGGTCGAAGGTCTCGGCGTGCTGGGGCTTCACCTTCGCCTGCCGGTAGTCCCGTGACGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 320970-320819 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVR01000005.1 Streptomyces flavofungini strain JCM 4753 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320969 29 96.6 32 .....A....................... CAGCTTCGGCACGGCGGCCTGGGTCAAGAGCG 320908 29 100.0 32 ............................. GCCGAGAGGCGGCCATCCGCGCCGCGCGTGAT 320847 29 89.7 0 .....................A...A.T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : ACTCCCCGCAGCGGAGGCGGAACGCCTCGGCCTGGTCAACCGCGTCGTCCCCGACGCCGACCTCCCGAAGACCGCCCAGGCCTGGGCGGACCGCCTGGCCACGTCCCCGACCCGAGCCCTGGCCCTCACCAAGCAACTGGTCAACGCCTCCTTGGACACGGACCGCACGGCCGCGCTGGCGGCGGAGGCTGCGGCGCAGGAGATCAATATGGCTTCGGCGGACGCGAAGGAGGGGGTGGCGGCGTTTGTGGAGCGGCGGGGGGCTGTTTATCGGGGGAGGTGAGGGGGGCGCGGTGCTGTTCCGCCTTCGGACTGGCGGTGCGAACGGTAGGAATGGGGGTGCGTCAGGTGTGGGGCTTAGGGCAGTTCGTGGTGGCTGGCTGGTGTATGGGTTATGCATGCGGGGAGTGCGGGTTTGTGGTTGAAGGAGCGAATTGTCGGTCTCGCAAGAAGTGAAGAGAAACTGGCTGGCCGCCGGATAAAACCGCAGGTCGCGGCCT # Right flank : TCCCCTACCTTGACGCCGCACCAGAACTGTCGGATGTGGATGATCAATTGCGGGTACGGCGACGGCCCCAGCACCGACCACACCCGGGAGGCGGGGATGCGGCGACACCTGGCAGGCCGGGCCGATCCGGTCAGTTCAGTGCGGCAATCGCCTTGAGGATCAGAGCCCGCGCCTCGGCCCCGTGGACCGCCATGCCCCGCAGTTGCTCGAAAGCCTTCAGATACAGGGCGATCTCCGAAGGTTGGGTGATGTTGACCTCCGCCGAGAGGAACTCCACGGACACGAGAGTGTCGTCGTACACATGGAAAGTCTCGACAGGCCATTGCATTCGCTGCCGCGTTGCCATGGGGACGATGCCCAGCGATACCTGCGGGAGCGCACCCGCAGTGAGGAGGTGGCCGAGCTGGGCGGCCATCGCGTCCTCGTCGCCCAACTGGGCGTACAGGACGGCCTCCTCGATGAGCATCACGAATCGGTGGCCCGGTTCGTGAATGACGCGG # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //