Array 1 880-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFRI01000049.1 Escherichia coli strain JML155 sequence049, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 879 29 100.0 32 ............................. CCATGCGCAGTGATTCAAGTCGGCGCGCATCA 818 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 757 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 696 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 635 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 574 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 512 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 451 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 390 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 329 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 268 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 207 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 146 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131575-130449 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFRI01000092.1 Escherichia coli strain JML155 sequence092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131574 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 131513 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 131452 29 100.0 32 ............................. GACCATTCTGTGAGCCGTAAAACAGAAAAATC 131391 29 100.0 32 ............................. ATTCTGTTTTCGCTGCTGTAGACCAACTTTGG 131330 29 100.0 32 ............................. CCCAGGTTTATTTGCATGAAAATACATTGCGC 131269 29 100.0 32 ............................. ACCGGGTATACAGAGCAACCGCCAATACTCGC 131208 29 100.0 32 ............................. CGGCGGCAATTGATGCGAAAGACCTTGGCAAT 131147 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 131086 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 131025 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 130964 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 130903 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 130842 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 130781 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 130720 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 130659 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 130598 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 130538 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 130477 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //