Array 1 258662-259140 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTJP010000001.1 Listeria marthii strain FSL W9-0603 NODE_1_length_913319_cov_134.109630, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
    258662	    29	 100.0	    34	.............................	TTGAAACCAGATGCATTATTTACTCCTGTCATTT   	
    258725	    29	 100.0	    36	.............................	CTAAAAACTGAAATGATCATCGATTTATCAGATATG 	
    258790	    29	 100.0	    35	.............................	AACAAAAACACGTTATTTGTTCGATGTAATGTAAA  	
    258854	    29	 100.0	    36	.............................	GTGTAATACAATAGGCGTGTAAGTACGAAGAGTTGC 	
    258919	    29	 100.0	    35	.............................	ATCGTTGGGGGATTCTGAGTACAGTCGGCGGACTG  	
    258983	    29	 100.0	    34	.............................	TTTATTTAGTGCCTCCTTCTCATATTCCAAACAT   	
    259046	    29	  96.6	    37	..............T..............	AGTTTAGATGCTTTGCTAAATCAGAAAGAGTTCATTA	
    259112	    29	  96.6	     0	.......T.....................	|                                    	
==========	======	======	======	=============================	=====================================	==================
         8	    29	  99.2	    35	GTTTTAGATACTTAATGTGAAATGTAAAT	                                     	       

# Left flank :   GCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAAGTGGGAGTGGTTGGGATTAGGGAAGTTTGGTGGTTTTTGGTTTTGAAAATCATGTAGAGAAGGGTGGGTTTTCGTTGGTTTTTAGCCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TTAATGTAAACTTTCTTGTGGGATTCCAGCTGTTTTCGGTTTTAAAGTACAAGGAATGACATTATAAATGTGAAAAGAAAAAATCCAACTATATCCACACCCAAATCATCCATATAATCAAAAAAAGCGTGACTGCCAAACTAGCAGTTACGCTTCTTTTCAATCATTAAACTCTTTCAAAACGTCCTCTTTAATTTCAGTATAATTTTTTACTTCCTCTTCCTCTTCGGAAATAAAATTATATGCTTCCACTTCTCCTAAATTCTCAAAATCCGAAAGAGTAGCTCCCGTTTCTTTCAAATCTTCATTAAATTTCCCGTAGCTCATACTAATTATCGAACTTAGTTTTTCACTGTCATGTCCACCGCGCAAAAATAACGTATACTCTTGCTCCTTCTCAAGCGCGATATAATTCTCAATAGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAGACATCAATTTTGTCGCCTTTTTTGAAGGTGCCTTTATAAG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATACTTAATGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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