Array 1 1658368-1656255 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028460.1 Bifidobacterium animalis subsp. animalis strain CNCM I-4602 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 1658367 29 100.0 32 ............................. CTGTATCCACGGCGACCCGTCATACACGAATT 1658306 29 100.0 32 ............................. TGCAAGGCCGAGTCCCTTGCCTACGCCGCTGC 1658245 29 100.0 32 ............................. CGCTGCGGGAGGACAGTCAGGGTCGTCGATTG 1658184 29 100.0 32 ............................. GTTGCCCATAGCGCCTTCGATGGTCTGCGTCG 1658123 29 100.0 32 ............................. TTCAGTATCCATGCGTCGCCCTTGTGGTGGCG 1658062 29 100.0 32 ............................. AGATATGGGTCGAGCGCACGAGGTCTGCGCAG 1658001 29 100.0 33 ............................. GTTCCGGCGCTAGCGCGGTATTAGCCGCTACAG 1657939 29 100.0 32 ............................. GTGAGAGCGCAAGTCGGGTCAAGAAAACGTTG 1657878 29 100.0 32 ............................. TAATACCCGTAATGGGAACTCGAATAGAAGAG 1657817 29 100.0 77 ............................. GCCGGGGCGAAGGTGAAGACCTGGCGTGAGGTGTGCGGCAACAAGGGTCCTGCCGGATTCGGCGAGGTCGCCAAGAA 1657711 29 100.0 32 ............................. GGTATTCGCTACGAGCTAGAGGGCGCGAAGAG 1657650 29 100.0 32 ............................. AGCGAGAATTGGCTGGACGTGCAAGCGCGTGC 1657589 29 100.0 32 ............................. ACCGAGTGTTTCATCAACTCAGCCAACGGATA 1657528 29 100.0 33 ............................. TTGAGCGTGGGGTACTCAGGTATGCGATACATG 1657466 29 100.0 32 ............................. GCAGCGTCAGACACGAATGCGCGCACTGTCAC 1657405 29 100.0 32 ............................. TCACGCATATTACCTTGCGTGGCCGCTGGAAT 1657344 29 100.0 32 ............................. CTCATGCCGTCCATCGCGTCCGCCATGCTCTC 1657283 29 100.0 32 ............................. TAATCCATGACGCCGTTTTTATCGTTCTCCAA 1657222 29 100.0 32 ............................. GACAAGCGTAAGGCAGCGAGGGGCGGGAAGTC 1657161 29 100.0 32 ............................. GCACGCTCGGTTGCCGGCGTGTAGTTGAGTTG 1657100 29 100.0 32 ............................. TCGGCATCACGCAACGCCTGCACCTGAGTCAA 1657039 29 100.0 32 ............................. GCGTCCGGCATGCTCACCGCGGACGGCAAACC 1656978 29 100.0 32 ............................. GGTGGGCGACCAGCGCGAACGGTGCCGTCCAA 1656917 29 100.0 32 ............................. AACCGAGCGTCCAACAGCACTCAAACCGATCG 1656856 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 1656795 29 100.0 32 ............................. GCGGGCAGGTCCTTGAGCGCGACATCGCCGTA 1656734 29 100.0 32 ............................. CCAACAGCAGCCCAAGGCACGCTCATCGAAAG 1656673 29 96.6 32 ............................A GGTTTTCGCGGCCGCATGTGATGTGCGAGCCG 1656612 29 100.0 32 ............................. TTGGGGACGGCCGTCGGCTGTGGGTCGTCGCT 1656551 29 100.0 31 ............................. GGCGTCTTCGACGTGGCCACCGCCTTCATAC 1656491 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 1656429 29 86.2 118 ..........T...A.A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTACCACACCTAATCACGGTGATTG 1656282 28 79.3 0 .......T......A.T...-.C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 33 29 98.9 36 GTTTGCCCCGCACAGGCGGGGATGATCCG # Left flank : TCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCGAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGTGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGACT # Right flank : GAGTGGTTCCGGCTAGCCTTAGCTGCCGGAACCACTTCGTCCAATCCTACCCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACGACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGTGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAGGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //