Array 1 43033-42016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRV010000006.1 Listeria booriae strain FSL L7-1409 NODE_6_length_215557_cov_122.599527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 43032 30 100.0 36 .............................. TTTATTTTAACAATATTGCTATCCATTTTATTTTGA 42966 30 100.0 38 .............................. AGGAGAGCATGTAATCGAGTGTTCTTCTCATTTGAAGG 42898 30 100.0 35 .............................. TAAACAAACAAAGGTCTCGTTTAAAAAACAATGGC 42833 30 100.0 35 .............................. CAAGCAATAACGGTTTAATAAATGCTTCTATAGAA 42768 30 100.0 35 .............................. GCCGTTGATAACAGCAAGTATGCAACCCCGCAGGT 42703 30 100.0 36 .............................. AGGAGCGGTATTTGCATTTTGCTTCCAAGTGCATCC 42637 30 100.0 36 .............................. ACATTTGCAGGAGCAACCCCGCTGAAAACGAACTCA 42571 30 100.0 36 .............................. ATTGGTACATTGGCAAATGTTTTCTCCAAGTCTTTT 42505 30 100.0 35 .............................. ATGAATTTTCTTTTTCAGCGATACCGCGACGAACT 42440 30 100.0 35 .............................. ACTGGATCAGAAACCCAATCCCACACAGAATCCTT 42375 30 100.0 35 .............................. AATTCTCCAAATTTGCTACGTAAATCAACGACATT 42310 30 100.0 37 .............................. GCTGCTTGTAAGGAATCAATATTCTTAGCTGATTTGG 42243 30 100.0 37 .............................. GGTGTCAATTACTTCATAATTGTTGAAGCAGTTTTTA 42176 30 100.0 35 .............................. TCTTGAATTTAGGGTGATAAACATGTACCGTGTCA 42111 30 96.7 36 .....................G........ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 42045 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGCCTCGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATGATTTCTACAGATAATCTTGATTCGTAATAGCAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGACATCGACAGATTTTTGTTGTGTATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : GTCAGCGAGGCATATTTTTCAAAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGTATTGAATAACAAGAGGGTTAATATCCATTAATACTGAAAAATGGATATTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATCGATATCGTAAGCAGTGATGTGCGCGCTATCCGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGAATTTTAACGCCCTCTACACCATTTACAGTAAGGCTAATTTTCGCAACGTCTCCAGAAAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 47297-46280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRV010000006.1 Listeria booriae strain FSL L7-1409 NODE_6_length_215557_cov_122.599527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47296 30 100.0 36 .............................. GAACATAATCTTGTAACGCTACGGGTAGGCTATTCT 47230 30 100.0 36 .............................. AGCGAAGCGTTACACCGTGATTGTTTAGAGCGTTTG 47164 30 100.0 37 .............................. ACCTACATTGTATCATGAAATTTAGTTCGGAACAATT 47097 30 100.0 36 .............................. TTATTTACCTCCTATCTTGAAGTTCATTTTAGGGTC 47031 30 100.0 34 .............................. AGATTTGAACCTAACATTTTGATACTTATTCCAC 46967 30 100.0 36 .............................. GACTTAGACAATTCCAATAAGCTATTACAAGACTGC 46901 30 100.0 36 .............................. AACTATATCAAAGTTTAACAAAATAAAAAAGCCCTC 46835 30 100.0 36 .............................. ATTCGTTACGTAAAGGAGATTGTATAATACATGGCA 46769 30 100.0 36 .............................. TCAGCAACACGGCAATAAGCCCAATCGACCAGTAAA 46703 30 96.7 35 ........................A..... AAATTTAGAAATGAGGGAAGAAAATTGCAAATTAG 46638 30 100.0 35 .............................. CCAGCTAAAGCACCTTTCTTTTTCGATTGCGCAGC 46573 30 100.0 36 .............................. ACCGCCAATCCCTTATCGAGGTCATGACTGACCCCA 46507 30 100.0 35 .............................. GTAGTTTTCGTTATACATGAACTCTCCTCCTTTCA 46442 30 96.7 36 ....................T......... GACAATGTAAAACGTCTATATCTCATTCGACCTGAG 46376 30 96.7 37 ....................T......... GTAGTACCGTCAAGGTTTTTAACAACAATAATTTCTA 46309 30 83.3 0 .............C......T...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGATGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCCCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTGTGGAAAAATTAAAACTACGAGTCAACATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACGCCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 190633-193162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRV010000001.1 Listeria booriae strain FSL L7-1409 NODE_1_length_1292408_cov_92.564766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 190633 30 100.0 38 .............................. AAAGAATTAAATAAAAAATGGTTATTGGTAAAATTAAT 190701 30 100.0 36 .............................. TCATAAATCCGCCTGCAATATTTAGAATTGAGTTTA 190767 30 100.0 36 .............................. TTGGTACACAACGGATTAAGTGGTGTGGAAGAAATT 190833 30 100.0 36 .............................. AATGATCATGTGCTAAAGCAAGTTTATCTGCTTCAC 190899 30 100.0 35 .............................. AAAAGAACGGTAAAACGCTTCTTGCAATTGGTGGG 190964 30 100.0 36 .............................. TCCAGCACCGTATCAAAAACAGTCTAGCATCTTCTA 191030 30 100.0 34 .............................. TCACATCTTTGCTAATACTTGGGAAATTAATTAA 191094 30 100.0 36 .............................. TCACCTTCTTCATCTGCTATATCTTTTTCAAATTTC 191160 30 100.0 37 .............................. GAACACACGTTAATTGTTCACGGCGCAGTCGGTGATA 191227 30 100.0 35 .............................. TTGTCTCCCTGCCCTTCCTGGCTTGTTATCTGTTC 191292 30 100.0 36 .............................. TGAAGATACAAGCCGACTCGCTCATAACGGTTAAAT 191358 30 100.0 35 .............................. GATGAAAGCGTTGGTTTTCCTGTAGCATCTTTTTT 191423 30 100.0 36 .............................. TACATCAACACTTTCAATACTCAAAAGGTCACGCAA 191489 30 100.0 37 .............................. TTCTAAGCCTAATTTGACCCGTGAACTGGATTTTGTT 191556 30 100.0 34 .............................. TTATCTTCTCCTAGAGAGCCGAAAAGTGAACTAG 191620 30 100.0 35 .............................. ATAACACTTAAAAAAAGTGTTGATGCTACGGAAGC 191685 30 100.0 35 .............................. CGGAATGAGAATGCGGTTAGAACTGGGGAATATCA 191750 30 100.0 34 .............................. AATTGTACTGTCCCTGTCACGGATGCGTCATTTG 191814 30 100.0 37 .............................. TTGTCATTTTTAGGCTTACTTGTAATTCTCGCCTGTG 191881 30 100.0 36 .............................. TAAATCCAGATATCCGGTCTCGTATCGATTTTCTTC 191947 30 100.0 35 .............................. AATTCATTAGGTCATCTTTGTGGTTATGTAAATAT 192012 30 100.0 37 .............................. CAAGGTCACGCCGAATATTACGAGACTCACTCTCTGT 192079 30 100.0 35 .............................. CTGTTTGTATATGCTTGTAACAGCACATAATCACC 192144 30 100.0 35 .............................. TTGACATTTATCAAAAGGGTAAATTTAAGCATTAC 192209 30 100.0 36 .............................. CGTAATTAAGTTCTATAAAGTCGAGCTGGTAAGAGC 192275 30 100.0 36 .............................. GCGAATTGGGAAAAGGCAAATCCAATGTTGCGCTAT 192341 30 100.0 37 .............................. AGTGTTGGAAAGTAAGGGCTGGACGCTGGTATCTTAC 192408 30 100.0 36 .............................. TTATGCCTTGGCGCACTAAAGACGGCTTGCCTGCCA 192474 30 100.0 36 .............................. CGCCCTAAACGCGTGATATCAATGACAAGCACGGCA 192540 30 100.0 36 .............................. GCACTAATACTACGGATAAAAGTCATAATTTGGTCA 192606 30 100.0 34 .............................. ATAAAATGGGTTTGAGAGGTGAGAGCATGCAAGC 192670 30 100.0 38 .............................. ATACGCAGTGTACGGGCGTTCGGGGCGCGGCAAGTCAA 192738 30 100.0 36 .............................. AAACGAACACAACGATCATTTGCTTTTTAGTAGCTT 192804 30 100.0 36 .............................. TGTATTGTACTGCGGATCGTTGACATTGGAGATCCA 192870 30 93.3 35 ..................C.......G... TGTTACCGGATAAAGGGAATAAAAGGAAGCGCAGA 192935 30 100.0 35 .............................. ACGTGAATGCACCAACGCGTAAGCCGACGTATACG 193000 30 93.3 36 ...........................GG. GTTGCTGGCGTCGGTTTTGGATGTTCGATGCAAAAG 193066 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT T [193082] 193134 29 80.0 0 ..C..............A..-...C..G.C | ========== ====== ====== ====== ============================== ====================================== ================== 39 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGCGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGATTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTAATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACAAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18125-18282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRV010000003.1 Listeria booriae strain FSL L7-1409 NODE_3_length_430820_cov_108.258205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 18125 26 100.0 40 .......................... ATACTGTATAAAAGACTTCTTGTTGTCTTTGATTTAGAGT 18191 26 100.0 40 .......................... ACACCTTCGGCTAAGAATACAACACGATTTGATTTAGAGT 18257 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 ACCTCAAAACAGAAGAGGACTAAAAC # Left flank : GGATTAATACTACTGAAAAATATTGGAAAAAAAGAGGCGGGAAAAAATGGCCAAAACATATTGAAAAACTTCATAAATTCATGGTAGGGGAGAACTTGTTTGTTTCTAAGAGAAATGACAGAAATCGTATAGCGCATTTAAATTATTTAACACCAAAACATAAATATTCATTATTGTATTTATTCGAGAAATTAAGAGAAATACTTAAATATGATCGCAAATTAAAGAACGCAGTTACTAAATCATTAATCGATCTTTTAGATAAGCATGGTATGTGTGTTGTGTTTGCTAACTTGAAAAACAATAACCACAGATTGGTGATAGCAAGCCTAAAACCAAAAAAATTGAGACATTTAAGTGGGAAAAAATTAAATGACAGTTATATTGAAACGAATCAAGTTTCAGAAGAGTATTGTAGTATTGTGAAGGCGCTATTGGAGATGTGACGTAGGGTATTTCAATTATTAATAAAAGAATTACAAAGATTAAAGTATTAAAAC # Right flank : CCTCTACTGTGGATAAGTGGGATAAATTATTTTTAATTAATCGGAGGTTAGTAGCCATAGAAAATAGAGCATTCAAAGTGATGCTCATCCAATCGGTAGTCAATGAAGCAGTATTTACTTGCAAAACAATGATGTATCCTATTTTAGTTTCGAAAGCAGTTAGGAGTGCAAAAATGATAAAACTTACTTTCTTCCTCGACTCACGAGACAGTCTAAAACAGTCTGATGAAGTAGAGCTAGAGCTATTCAATTCTATTTTTGACAAGGAGTTCCAAGAAAGTTATCTCTTCGTAAAGGAGGAGCAAATAGTTCTTGATGCTTTTTACTTGGAAGACTCGCTAGAACCGTTTCTCAAAAATGATGAGGTTATGCGTTTATTGAAGAAAGATGGTAGCAAAGCGTTACCTATCACACTTCAAGGCGAAAAAATTATTAGTACAAAGAAACTGCCAAGTGTTGATGATTTTTCGAAGATATTCGATATGGGGATATCTGTACAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAAAACAGAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 145442-148019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRV010000003.1 Listeria booriae strain FSL L7-1409 NODE_3_length_430820_cov_108.258205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 145442 30 100.0 34 .............................. TTATATGAATTTCGTATATAGTTGTCAACTTTAT 145506 30 100.0 35 .............................. TTAAAATTACCACCTTTTCCATTTTATTTTTTAAC 145571 30 100.0 34 .............................. CATTTTCCTTGCTTTCCAATGGCTCATTTTCTGA 145635 30 100.0 36 .............................. GTTAAATCCCACAACGGACAAAAACATTTTGTTAGA 145701 30 100.0 36 .............................. AAAGATGATTTAGAAATAACATTTTCTAAAGTAACC 145767 30 100.0 38 .............................. AGGGCTGATGCACTACACATAGATGAGAGATATGGTTT 145835 30 100.0 36 .............................. AGCTGTTCCTGTAAATTTGTGTTTTCCTGCTTCTAT 145901 30 100.0 36 .............................. ATAGAAAATATCGATGGCGGTATTCATTTAAACAAC 145967 30 100.0 37 .............................. ACCCGTTGATTATTGGAAATGCGATGCACAAGGGTAT 146034 30 100.0 35 .............................. GCCCATATTTATGATGTATTTTCTGTTTGCGATAA 146099 30 100.0 35 .............................. TCACGTAATTCTGCTGATGTTTTGTACCCTTCCGC 146164 30 100.0 34 .............................. ATTAAATTTAACTCTTCAATTAATTTTTCGTTAT 146228 30 100.0 35 .............................. TACGGAAATAAACATGGCATTTGAAATTAAAAAAA 146293 30 100.0 37 .............................. TTCTGCATCTGGATAAGCTATTTCGATTGTGCGTAGT 146360 30 100.0 35 .............................. TAATCATGATATAAGAAATCAAATCATGAAATACT 146425 30 100.0 36 .............................. TTAGCATCTGTTTTTGAAGTTACGTATGCCGATAAT 146491 30 100.0 35 .............................. GTATACCAATTTAGTTTTGAAGTCATGTAAAGTGT 146556 30 100.0 36 .............................. ACAAGTAAGAAAGCCACCCCAAAAAACTGGAGTAGC 146622 30 100.0 36 .............................. TTTCTTGCAGTCCATGAAGTGCTTCACGGAACGCCT 146688 30 100.0 37 .............................. AGACGCAGGCTGCAATTGATGATCGTGTAAAAGTTTC 146755 30 100.0 34 .............................. CTTGGTATGGTGAAACAAAACCAACTTCAATGAA 146819 30 100.0 36 .............................. TACTTTATCAATTGGTATTGCATCAGCAACTGATAT 146885 30 100.0 36 .............................. CTTGATGAAAAAAATCTATCAGCAATAGGCCGCGGT 146951 30 100.0 34 .............................. TCCATATATGTTAGATAGTCATAGTGTTTTTCAC 147015 30 100.0 36 .............................. GAAACTGAAATATACGTCTCGCGCAATAATGAAGCT 147081 30 100.0 35 .............................. CGTTTTCAAGCGCATGGCTTCCGCGCGGCACACTT 147146 30 100.0 36 .............................. TTGCTAGAAGTAAAAAGCATGTTTGACGCAACGATG 147212 30 100.0 36 .............................. TTTTTCCGTTGAAGGTGGTTTACGAATACTTGGATT 147278 30 100.0 36 .............................. GCAGGTTATACGATTGATACAACACCGAGAAAAGTT 147344 30 100.0 36 .............................. CTAGATGATGATGAGGTTATCAATTCTGGAGAAGAT 147410 30 100.0 35 .............................. ATCCAAGTTGGACTATATCCGTTGATGGACAAACC 147475 30 100.0 34 .............................. CTGTATAGTTGTCAACATTTTTCTATCCAGCTTT 147539 30 100.0 37 .............................. CACCATTTTCGCGTTGAATTGGTCGTCTAATCCGCTC 147606 30 100.0 35 .............................. TCAACAGCCAGTACCGTTACAATCATTCGTCAACC 147671 30 100.0 37 .............................. GAAGCATTATCATGAATTTGACTGAGGGTTGTCATTG 147738 30 100.0 34 .............................. ATGGTTGTAGACGAGTGCTGGAACGATGGTTTCA 147802 30 100.0 36 .............................. ACGTGATCTATGATAATCGATGTTTTACCTGGTCTG 147868 30 96.7 34 ....C......................... ACACCTGATCCAGACCCTATTTATGATGCCTATT 147932 30 86.7 28 .........C...C...A......A..... TAGGAAAAGGGCGGACTTATACACCCTG Deletion [147990] 147990 30 76.7 0 C........C.....C.AC....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.0 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGCTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGTGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGAAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACTATCTCTGTCTACCAAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCGCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATAACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGTACGGCTTGCTGTATGTTATTTTTCTTCCTAAAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //