Array 1 18112-17817 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJE01000023.1 Bacillus pumilus strain MG84 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 18111 32 96.9 34 ...................T............ CATATCAGTTATGCTCTTTTTTTCGTTCATCGCG 18045 32 100.0 34 ................................ AATACGTAGTTCAGCAAACTATCGAAGTGTACAA 17979 32 96.9 34 ...............G................ CCATCCGAAAACTCAGTAATGAGTGATTTTAGTG 17913 32 96.9 33 ............G................... GGTGAATGGTGGGAAAAGACAGGAAAGCCTGGT 17848 32 71.9 0 .........A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ ================================== ================== 5 32 92.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATTATAATTCGGATGACTTTTCATATCATCCATTCTCGTCGCACTCTATATGAGTACGTGGATTGAAATAACAGGTTTCGCGACACCTTGACCAACCTTTTTGTCGCATTCTATATGAATGCGTAGATTGAAATTCTTCAGCATAATTTTCTAGCTCCACCAATTTCGTCGCACTCTTCATGAATGGGTGGGTTAATAATTGAGAAAACATAACTCTGCCTCCTGACTCAGTAGTCAAGTATCTAATTGAATTCAATTGTTGCTGAAATATAAATAAGTATGATTAACAACTTTCAATAGATTTCATACTAAGAAAAAGTCGATGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTATTCATTCGACAAAAATAAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGAAGGTTTTGACTATGATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCACA # Right flank : TTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGAAAAATCAAAATAATGTACTTCCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAGTTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCAACAAAAGGATAATGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCGTAATGATCCTTGTATTTATCCACTTCCCACCGATAGACAGGAGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGC # Questionable array : NO Score: 6.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 26963-26269 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJJE01000023.1 Bacillus pumilus strain MG84 NODE_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================================================================================================================================================================================================== ================== 26962 32 100.0 35 ................................ TTCGAGTGTAACGACATGAACTCCATTAGACACTA 26895 32 100.0 34 ................................ CCAATCCACATCATATTGGCCCAAATTTGTGTTA 26829 32 96.9 35 ...........T.................... GATGCTAGTGATTCCATTACAAAGTCCCCCATAGG 26762 32 81.2 235 ...........T.......G.A.G.A.A.... TCTTGTCAGTAGGTAGCTTGAATCATGAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCAAATGTGAGGTGAACATAAAATCCTTGGTGCATTCGCACCTTTTTATTCGTTAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCGTATAGAAAATTAAGGGTTTTGGCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA 26495 32 96.9 33 .......................G........ ATTTTCTGTTCTTGCTCGGCGCGCATTTCCAAT 26430 32 96.9 34 .......................G........ CATGAGACATATAACAATCGATTCCCGCACGTAG 26364 32 96.9 32 .......................G........ TTCCATCTGCAACCGTTGTTTATATCCATCAA 26300 32 87.5 0 .............A.......C..T..T.... | ========== ====== ====== ====== ================================ =========================================================================================================================================================================================================================================== ================== 8 32 94.5 63 GTCGCACTCTACATGAGTGCGTGAATTGAAAT # Left flank : GGATTTGAGTCGCATTCTATTTGAGTGCGTGGGTTGAAATTCGGTATCGTCACTCTACCTCGGATATGCAAAAACGTCGCACTCTATATGAGGCGTGGATTGAAATAATGATTGTGTGACCATGCTCAGGTGCTTCTATTTGTCGCACTTTACATGAGTGTATGGATTGAGGTAGCTTGAAAGAAATGTTGACAGTTGCGCTTGATTTAGGTGTGAAAAACATGACTCTGGCTCAGTAGTCATATTTTTAAATGAATTCAAACCTGTTGATGAAATCATGAAAATACCTTTAGAGCAATAGTTGTTAATTAAATAGGATTAAGAAATATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTCATGAAGGAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGACTATTATTTCCTAAAAAATGTTACATTTAGGGCGAAAATCGCA # Right flank : GATTGTCTCTTAAACGGGTATGGCCACCTCAAATCCATCTTCTTACAATATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTTATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGATTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGACTGACAGGAGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGATGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTA # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //