Array 1 42897-44267 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRV01000017.1 Escherichia coli strain 509sc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42897 29 100.0 32 ............................. ATTTCGCGCTCTCTGTATCGAATGTCACGAAA 42958 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 43019 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 43080 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 43141 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 43202 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 43263 29 100.0 32 ............................. AGGTTCAGGAGAGTGCAATGCGTATCACAACT 43324 29 100.0 32 ............................. CCGATTCCGCTGGTCTTGCGAACTCCCCTGAA 43385 29 100.0 32 ............................. AAATCATGGATTGATGAAGATGGTTATGAAAT 43446 29 100.0 32 ............................. GCGTCATTTTTATATTCGTTATCTCCGGAGCA 43507 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 43568 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 43629 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 43690 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 43751 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 43812 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 43873 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 43934 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 43995 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44056 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44117 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44178 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44239 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69967-71034 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDRV01000017.1 Escherichia coli strain 509sc, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69967 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 70028 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 70089 29 96.6 32 ...........A................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 70150 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70211 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70272 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70333 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 70394 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 70455 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 70517 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 70578 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 70639 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 70700 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 70761 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 70823 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 70884 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 70945 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71006 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //