Array 1 137376-136613 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDJ01000004.1 Pectobacterium carotovorum strain S1-A16 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 137375 28 72.4 34 ..T..G.T-.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 137313 29 93.1 32 A.C.......................... TCCATGCCTTTCCACTGGAAGCGCTCAAGGAT 137252 29 100.0 32 ............................. GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 137191 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 137130 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 137069 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 137008 29 96.6 33 .............T............... AGAAATCTCAAAATCAGGTGGTTATTCTACCGA 136946 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 136885 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 136824 29 100.0 32 ............................. TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 136763 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 136702 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 136641 29 89.7 0 .C..........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 13 29 94.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTCAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACTGTAACGGTGAGGCGCTATGCCAATGATTTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTAGGTCAGACGACACGATATGATTTCACCCGCATTAGCCCTGCTGAGCTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGACGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCAAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139304-138177 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDJ01000004.1 Pectobacterium carotovorum strain S1-A16 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 139303 29 100.0 32 ............................. CTGATACAGGCCTGCTGGAAAACTAACCCTGA 139242 29 100.0 32 ............................. CCTTCTTGGTGAGGCGTATCGGGTTTAGGGCT 139181 29 100.0 32 ............................. TCACAGACGGTACGAGCGGAACGACAGTGGTA 139120 29 100.0 32 ............................. ACGCGACGCTTAGCCATAACGCGATCCTGAAT 139059 29 100.0 32 ............................. TGTCATCGATAACACGATCTTTGGGTAGATCA 138998 29 100.0 32 ............................. CGTTAAAAGTGAGAGTTTTCTCGGTAATAAAT 138937 29 100.0 32 ............................. GTGATGCCCAGATGTCTCACTTGCGCGGCATT 138876 29 100.0 32 ............................. CATGCTGATAATCAGAGCGGCCTGGGCTTCAA 138815 29 100.0 32 ............................. TAAAATCGTTTCAAAATCCAGCGTTTCGATAA 138754 29 100.0 32 ............................. GTAATCGCAACACATCGAACATTTACACGTTA 138693 29 100.0 32 ............................. TTGTTTTTGCGCGATGGCTATGTCGTCCATGC 138632 29 100.0 32 ............................. CCCGCCGATATGGAAATTCGCATCGTGCCGGA 138571 29 100.0 32 ............................. AAAAAATTCGCTTGATACGCGTTGAAATCGAA 138510 29 100.0 32 ............................. CAGGCTCGCGGCCAGCTCCGGCACGTTGGTGC 138449 29 93.1 32 ..........T..G............... TAATCAAAGAGACGCCGGGCAGTCGGAGAAAG 138388 29 93.1 32 A............G............... CGGGATGCATGGGGCGCTCAGATTGGTGCGCT 138327 29 86.2 32 .A..........TT.............A. GCCATGTTCGGACACGTCGAAACCGACACTTA 138266 29 100.0 32 ............................. AGATCATTGCAAACAAAGAGGAACCGTTCAAA 138205 29 93.1 0 ................T...........C | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGTCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTCTTTATTCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : TAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 221858-221530 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDJ01000013.1 Pectobacterium carotovorum strain S1-A16 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221857 28 89.3 32 T..A........G............... GGGCAGAAAACGCAGACACGGCGGGTTGTGGC G [221852] 221796 28 89.3 32 .T.........C........T....... GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 221736 28 89.3 32 .T.....A.T.................. GTCAGTGATTAACAGGTCAAAATACAGTGCAT 221676 28 89.3 32 .T.........C.C.............. TGTCACGACGAAATAGACCGCAGAACGCGACA 221616 28 100.0 32 ............................ TATTCCTGTTTGTTTATAGTGATTACACTCTT 221556 27 75.0 0 .T.A...A....GC........-...T. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 88.7 32 GCTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GGTGTACATAACGTCTTTAAAAAATACGTCGCTTCCTGCGCAGTCAACATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGTGCGTGTAATTTCTGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGATCTTCTAACCGATAGTCATCATCCACAAGCGTTTTTAAAACCGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAGTCAACGAACTATTTCCCTGTAAGGGTACTTTAACGGAAAAATGATGATTTTTAAATATTAATAATACCCAATACACAATTTGCATTCCCTTAAAAAGAAACTTATTACTTAAAAACGTTACGAAATAAGGTCATCAATATGCGTTATTTAAGGGGGTGAGCGCTGGCGCAGTACTACCTCGATAATAGCCAGACAACAGCGCTTGAGGCCGTGGATAAACTGCCTGTGCGGCAGTGAACCTGCTGGACGAAACATTCTCGATATCAGAGCCTT # Right flank : CTTATCGAAATGCGTCGCTGGCGCGACGCATTTCGTGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGATAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCGGTGACCTGTGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 3.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 228684-228356 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZDJ01000013.1 Pectobacterium carotovorum strain S1-A16 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 228683 28 100.0 32 ............................ ATGCGTCAGCAAATTACTGAACTGGGGTTTGA 228623 28 96.4 32 ............A............... GCATCAAATTCTATAATGCATCGAACGTGCTG 228563 28 92.9 32 ...........CA............... CACAGGGTGGCAGCGATGCTGATTACAAAAAA 228503 28 100.0 32 ............................ ATTCGTCAGCAGTCATAATTACCTCGCCGCAG 228443 28 92.9 32 ............A....T.......... TAGGACCAATTGACTCATAATCAATTGGTCGC 228383 28 71.4 0 ..G........AAC......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGGAATTCAGCCAGCCACTTACCGTTTATTATTGCTGGCTAAAACATAAGCCAAGTATAAATATTAATCACTCGATTGTATATCCATAACATATGCAGATACCTGGCATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGGTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAAC # Right flank : ATAAAACGCCGCAAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTACTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACAAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //