Array 1 4308-4579 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFP01000121.1 Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 COR000122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4308 28 100.0 33 ............................ TGGGTGCCAACTGTTCGTTAAGACGATTAATTT 4369 28 100.0 33 ............................ TTTGGATAGGTATATTTGCGTTTTCACTTTCTA 4430 28 100.0 33 ............................ TAATTGATCGTATTATTGATCAATTTCCGGGGG 4491 28 100.0 33 ............................ CGATACCCTGGCAATGATAAGCTGGTTGAGCAA 4552 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTATTCCCCGCACGAGCGGGGGTGATCC # Left flank : CGATCAAGATTCAATTATAGCCATTGGGGCAGTCAAACACGATCAGACAGGTAAAATAGAGCACATACAACAATTTATTAAACTTGGGCATCCATTGCCCAAAGAAATCACGAAATTAACCGGTATTACAGATAGTAAGTTAGCAACTGAAGGTGTGGAGTTAGATAATGCTATGGAAAATTTTCGAGATTTTATCGGAACATTGAAAATCGTTGGTTATAATATTAGTTTCGACCTTAACTTTATCAGACAAGCGTTACGTCAACTAGGCGAAAATAATTTGGTCAATCAGAGTGTTGATTTATTATCACTAATTAAGCAAATTCAAAAATTCTTGCCTAATTATCGTTTGGCAACTGTTCTAAAAAAATATAGTATTAATAATGAACAGGCACATGATGCGTTATCCGACGCACAATCGACTATGTTGTTAGCGGAAAAACTCATTGAAAATGGGCAATTGGAGATTTAGAAATGTTAATTCTATAGGGATCGTTTAG # Right flank : CGGTGTCAACTAACTCACGCCAATCAAGAAAGGGTATTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1923-1756 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFP01000158.1 Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 COR000160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 1922 35 100.0 31 ................................... CGTTGAAGAGTTAGGAGAGACAAGTTTTGCT 1856 35 100.0 31 ................................... CGGTTGACCATGGTTTGTAGTGCTGACAACG 1790 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 3 35 100.0 32 GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Left flank : TTTAGTACCACTAACTGTGATTTTTGGGTGTTTTAGTCCGAATTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGTCCAGTATCCGTGTGATATCGGACTATCACGGTGTAAT # Right flank : TAATTGGATCCTAGTTTACTAGGATGCCAGTAAAGCACTAACCCCAGTGGGATTTATCCTGCTGGGGTTATCTTTATGCCTGCACACAAAAAAACGCCGCTAACGGCGTTTTTGCTTCTCCGTTTCTGGTTGCGCAACCAGCCGCCGGAACCCCCAATACCCGACCAGCACCAGAATCAGCAGATTGATCCCTAGATTGGTGTTTTGCAGCAACCGCGCACCGCCATAATTCAATAGCCGCACCACCGTGATTACACAATTTGCCACTAGCAGCCACTTGGTCAGCGTCAGCAAGTGCTGCTCGCGCATGTTGTGCAGAGGCACGTAATCTAGAATAAAGACGATCCCAATTTGCATCAGTAAAACTAACCAAACATCCATAGCGCACACCTCACTCAAATATTTATAATAATTATAGCGCTTACATAAAGTGTGAAGCAATCTTTTTCCAGGCAAAGTTGTTTACCGCCGCTGGTTTCCTGTTATGATAGAGGTAATGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 28602-28019 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFP01000032.1 Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 COR000032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28601 28 100.0 34 ............................ TTACGGCTGCTGGTATTAGTAAAATAAAAAAGCG C [28596] 28538 28 100.0 34 ............................ CTGTCGGCACCCCTCATATCTAATTTCTTCGCGT G,C [28520,28533] 28474 28 100.0 33 ............................ TATTTTTGGAAATGGTACGAAACATTTAAAGAG C [28469] 28412 28 100.0 33 ............................ CAATCAATGACTTACCTTGTTTACGTCCCATGG 28351 28 100.0 33 ............................ TATTGGGGACAACTAGGGAATAGATATGAGGTC 28290 28 100.0 33 ............................ CCGCATCACAAATGTCAATGTGATTTATCCTGG 28229 28 100.0 33 ............................ TCGCGGACTACCGTTTGTCAAGTTTTGGCTAAA 28168 28 100.0 33 ............................ TTTTAGACTTTAGCGCGTGACTAATAATTTCTG 28107 28 100.0 33 ............................ GATCACACCTGAATTTGCTCATGTGCTCAAGGG 28046 28 92.9 0 ........................G.T. | ========== ====== ====== ====== ============================ ================================== ================== 10 28 99.3 33 GTATTCCCCGCACGAGCGGGGGTGATCC # Left flank : GGGGGTGATCCCCGTATGCTGCTTAAAGTAAGTCAACACCTTTT # Right flank : TCCAATTATAAACTTGGCGGGCGTATTTTGTCGTATTTCTCGTATTTTCGAGAATGGCTTTTGCGATTTGTTATGAGGGTCCAGCAAAATGGGATATTTTTTATATGTAGATACGCGTAGTGCTAGTTTGTAACAAATTCAAAAAAGCCTAGATTATAGACCAAGGTAGCCAATTCAATTTTTAATTGAAAGCCAAAGGCACTGCGAGTCAAATTCCTTTCGATACCAAATTCGTCAACTAAAATGGAAAAACGTGATTCAATCGTACGCTGTAGTGTTTTGAGTGATTGCACATTATGTTCCTTAGCACCCTTCATATTCTTTCGGTAAGGTGTCCATAAACTGTAGCCAAGCGCTTTGAAATCAGCTTGGCTATTTTGCCCAACATGGCCGGACAAGGACAACCGTCAATTAATTCAGTCGCTATTTTAGCATCGTGGACTGAGCCAGCGGTAACAACGTAATTTAAAATATAGCCAGCAGTCGTGGCCCCCTAGTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 58-1150 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKFP01000097.1 Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 COR000097, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 58 32 100.0 35 ................................ ATTATCATCACTCAACGCTGTTAAAAATTCAAGTG 125 32 100.0 34 ................................ CAGTCTTCTCCAGCACCATCGTTGACCATGACCA 191 32 100.0 35 ................................ CGATATCACACGCACTACTTATCAAACATTTTTGT 258 32 100.0 34 ................................ CATTACTAGCGGTACTGCAAAGGGGACTGTTCTG 324 32 100.0 33 ................................ AGCTAACATTTGTTTAATGCTTGCATTATCCAT 389 32 100.0 34 ................................ AAGAATTATCCGCAGAATATGGCTATCCAATTGA 455 32 100.0 33 ................................ ATCTTGGTATTTCGCCCAGTTAACAACGGTTAT 520 32 100.0 33 ................................ TGATACTGAAACCATTGAGATAGCTATGATGAA 585 32 100.0 34 ................................ ATAGACATGAAGGATAACCAGTGAAATATATTCT 651 32 100.0 35 ................................ AATTACTTTATCAATGTTATTAAAATTATGCTCAA 718 32 100.0 35 ................................ TAATGCAAGCAAATGGGTTGGTGATAAAGTATCTG 785 32 100.0 35 ................................ GTTCCATGCTTGTTTTAGCGTAAAAGTTTTAAAAT 852 32 100.0 35 ................................ CCTTTTTCGGTTCTCTGGATCATGGAAAGCTCTTT 919 32 100.0 34 ................................ TACCCCCACCACCCAGCAATTTTTACTTGTTATT 985 32 100.0 35 ................................ ATCAATTGACAGTACTGTGCCCTTCCCAGATTATT 1052 32 100.0 35 ................................ GTCGAAAGTGGGTATCGCCAAAAGCCCGGTCGCTA 1119 32 93.8 0 ..........................CT.... | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.6 34 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : ATATGAGTGCGTGAATTGAAATCAAACAACTTGGAATTTAGTTGTTAAGGTCATTCAG # Right flank : TTCCTACAAGTCTGTTAACACCTCACGATGATAGTCATTAGCCATAAAATATAAAAAAGGTTCATCATTGCCGTTGACCAGCAATGATGAGCCTTTTTCCGTATTCTAATCAAACAAATTACAAACCATCAATTTCACTTAATTCAATACCTTCAAGTGGTGCAACCGCAATCGTATAATCATCAATACTACGTGGATGTGCAACGCCAGCTTTAGGTGTCACGGTTACTGAACGGTGAACCTTGGCTGATGAGTATTTACCCATCTTTCCTGGATGTTGCCACCAGAATAATTTGATAACAGCCATACTGCCATCCGGACGTGCTGAGGAAGCATCATTTTCAAAAAGTGTGCGTAAAGCTTCTTTGATATTTTCCGCATCTTCTGTGGTAAAGCCAGTTTTTTCAGCTAGCTGAGTATTAATACTGCCGTTAAAAACATAAACACCAAAATCCACAAAATGCTTAGTTCCCATTGTATCGGAACCTTTAGTTGTACTA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //