Array 1 8771-7278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLK01000128.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain 241 NODE_128_length_13860_cov_1.41979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8770 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8709 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8648 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8587 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8526 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8465 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8404 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8343 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8282 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8221 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8160 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8099 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8038 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7977 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7916 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7855 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7793 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7732 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7671 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7610 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7549 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7488 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7427 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7366 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7305 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32424-30459 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDLK01000035.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain 241 NODE_35_length_40972_cov_1.48126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32423 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32362 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32301 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 32240 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 32179 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 32118 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 32057 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31995 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31934 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31873 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31812 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31751 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31690 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31629 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31568 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31507 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31446 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31385 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31324 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31263 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31202 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 31140 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31037 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30976 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30915 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30854 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30793 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30732 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30671 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30610 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30549 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30488 29 96.6 0 A............................ | A [30461] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //