Array 1 452118-450546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWJX010000002.1 Bifidobacterium pseudocatenulatum isolate LH_662, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 452117 33 100.0 34 ................................. GCCCTCGTACCCCCATACTGGTAGGATGTTGGTG 452050 33 100.0 36 ................................. ATGTCACGAAACTTGACCGTGAGATGGCATCGCGGC 451981 33 100.0 34 ................................. AACATTTTCCGTGAGGAAATGCGTATGGCATCCA 451914 33 100.0 34 ................................. CGTATTTCGCAATCACAAGGGACGACAACAAATT 451847 33 100.0 34 ................................. ATCATGCGTCTCACGGGCTTCCATGCCCTCGATA 451780 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 451712 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 451645 33 100.0 35 ................................. CGTCAGAACATTGTTCTTAGTCATCAAATCATTAA 451577 33 100.0 33 ................................. ATACGCAGCGCAAGGCGACTACCAGAACGCCAT 451511 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 451445 33 100.0 33 ................................. ATACGCAGCGCAAGGCGACTACCAGAACGCCAT 451379 33 100.0 36 ................................. GTTAGTCACCTGCGCTTTTTGCTGGATGAACTTATC 451310 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 451244 33 100.0 32 ................................. TGAAGGGAGCATGGTGATGACCGTGGCTGCCA 451179 33 100.0 34 ................................. ATACCATCCTCGTTAAGGGTGGCGTGGTCGAACA 451112 33 100.0 35 ................................. CCCGACAAGCGTAGGGGCGTGCACCGTTTTATGGT 451044 33 100.0 33 ................................. ATGCGACTCGCTACGCCGTGCCCACGTCTGGAA 450978 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 450910 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 450843 33 100.0 33 ................................. AAGGCCGCGTCCGTGCAGGTGCAGGCAGCTCAG 450777 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 450711 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 450645 33 97.0 34 ....T............................ GATACGATTAAGATGATTTTCGAGCGTCGTATCA 450578 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 99.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //