Array 1 239328-237908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQS010000001.1 Streptococcus sp. 9.1 SB3746_S36_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 239327 36 100.0 30 .................................... ACTACCACTTTGCCCGTTTTGGTGGCGATG 239261 36 100.0 30 .................................... CCAGCAGAAGAGACAAAAGGGAAAGGAGCG 239195 36 100.0 29 .................................... CTGCTCAACCTACTACACCAGCTCCAAGT 239130 36 100.0 30 .................................... TGTTAAACAAATTTCTGTTACTGGAAGTGG 239064 36 100.0 30 .................................... AGGAGACGGAACGTGAATTAGCAGGATGGT 238998 36 100.0 30 .................................... TCTTGTTTCGTGATGCTGTACGATTCAACC 238932 36 100.0 30 .................................... CATCACTTGAATTTGCGACTTTATTGAATG 238866 36 100.0 30 .................................... AGTTGAGTTGTCTTACGAAATGGCTATTGA 238800 36 100.0 29 .................................... GAATATCTCGCATAAGAGCGATATAGTGA 238735 36 100.0 30 .................................... ACGTTCGTTTAATTCTCCCACTTCACGCCT 238669 36 100.0 29 .................................... AAGGTTGCATCCCGTCTTGGTATGGTGCG 238604 36 100.0 30 .................................... TACCTTTATTTCATTTGTCTATTCTGTTCA 238538 36 100.0 31 .................................... CACGGGCTATATTTCCCATTACCGTTAGAGA 238471 36 100.0 30 .................................... CATCACTTGAATTTGCGACTTTATTGAATG 238405 36 100.0 30 .................................... TTTTACCAACTCCTGTAGGCCCGACAAACA 238339 36 100.0 30 .................................... CCTCAGCGTTGCCAGAGACCTCAGCGTCGC 238273 36 100.0 30 .................................... GCGTCATCGGTTACTTTCGTTTCCTCCATA 238207 36 100.0 30 .................................... AAGTTGATGAAGTGACCTCACAAGGCATCT 238141 36 100.0 30 .................................... GTGGTATGTTGATGCGTTTGGTCAATACAT 238075 36 100.0 30 .................................... TTTTAATATCATTTGTGGGTAGTTGGGATT 238009 36 97.2 30 C................................... TAATCACTGCTGTGGTTGCTGGAGTCAACC 237943 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGCTTTATTTCAGAGGAATTTTATGATAGTTTTTATAAGGAGATTGGTCAGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTTTGTTTCCAAGTGATCAAGGCTATTTAAAGATTGATGAAGAAAATAGCAAGTTCGTCAATATTTTATCTGACCAGGCTGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCAACGAGAGAGGATTTTAGGATGTCATTAGAGACCGTAACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTATTGATTCAGTAATTTTGAATATACTAAATCATTTGTTTCACTTTAATTACCGTATAAGATATTCAAAAACTCCTGATGAGGAGCTATTGCATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACGCGATAAACATAGGGATTGTCAGGTTGACCGACCTCTTTGACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTATCCTTGAAGGTTTGGTCACTTCCTCTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATAACCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATAACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCAGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGGATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38848-39940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLQS010000006.1 Streptococcus sp. 9.1 SB3746_S36_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 38848 36 100.0 30 .................................... CTGACCACGGTTTGCCATTAGATCAATTAG 38914 36 100.0 30 .................................... ACCTAAACCGGGTACGGTTGCAGTCTACAC 38980 36 100.0 31 .................................... CTTTTGAAGATACATATAGCATGCAATCTTC 39047 36 100.0 30 .................................... GTCCTGGTACAAGTATCTTAAGCAACAAGG 39113 36 100.0 30 .................................... GATCACACAAGAGTTCACTTTTATGCCCAG 39179 36 100.0 30 .................................... ATGGAATTACGTAAAGAAGTTAATGCTATT 39245 36 100.0 30 .................................... TCAGTCATGAAGTGATAACACCAGTAGTTC 39311 36 100.0 30 .................................... CTTGCTATTTAGTTGTTTTTCTAAATCTTT 39377 36 100.0 30 .................................... CGGTACGAGATACACCCACAATCGCCCGAC 39443 36 100.0 30 .................................... GGTTTCCAAGAATGACCGAGTATGGTTTTG 39509 36 100.0 30 .................................... TTATCCGTATCTGGTTTAGTAGTCTTGTAC 39575 36 100.0 30 .................................... TTCAATAACAACTATCAAGACCAAGGGCGT 39641 36 100.0 30 .................................... GGTGTATATCCTGGTATGGAACACATGAGA 39707 36 100.0 30 .................................... GAAAGACTTTTCTCTTTCAATTACATATAA 39773 36 100.0 30 .................................... GATTACTAAAATCAAAGAATATATAGCGTT 39839 36 100.0 30 .................................... TTCCCCAATATCTTGTTTTACTGAACGTAC 39905 36 80.6 0 .............A......TA.......T..CTC. | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATTACAAGCTAATGTATTATTTTTGGAACCTAGACGGATTGGGAGGTTTCAACAATTTGTTTTAGATAAAGATTACATTTTGATGCCCTATAATAACTTGTAATTTGGTAATGAGTATAGATAGTCTTGAGTTATTTCAAGACTATTTTTTTAGTGTTTAGTGTTTCTGTATAAAGTTGAGTAGAAGAATCATTTTGTTAGAGAGTAGATTATAAGGTTTTGATAGAGGAGGAGTTAAATTGGTTGCCATAAGATTCCTAAGAAATACTCCAATATGGTGACAGTGACATTTTGTCTAAAACGTTGATATATATAGCTTTTTAAGGTATAATAAACATAAAAACGGGATCATTTTGAAGCTGAAGTCATGCTGAGATGAATAGCGCGATTACGAAATCTGGTAGAAAAAAGACAGTCTACGAG # Right flank : CCCCATTGTAATGATTTTGGTTGACTTCTCTTCAAACGAATCTTATCATAGAGGAGTATAGTATTGAAATGGGGGAAGAGACATGTTATACGAATATCCGGCGATTTTTCACACGATTGAGGAAGGTTATCAAATTAGTTTTCCTGACTTTGGTCGTAGCATTAGGGCAGATTCTTTGCCTCTTGCCATGACGAAAGCATCTGTGTTTTTATCACATATTATAAAGGGCTATGGAGATAAGGATTTACCTGTGCCGACTGCGGTAAGTAGTATTCCTAATGAGGAAGAACTCGTCGTTTTGATTCAAACAGAGCTTGATTAAGACTAAAAAACTCTCGGAAGATCGATTACCGAGAGTTTTAGTTTTTATTGGCCACATAGACGCCCAAGACGACTAAAATTCCTGCAAAAATTTGTAGATGTGAGAAGGGCTCTCCTAAGACAATAACAGCAGCTAGAATAGATATAATTGTCGAAATCCCAATGAAGGAAGCTGTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //