Array 1 5-1070 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUY01000008.1 Corynebacterium ulceribovis DSM 45146 A3ECDRAFT_scaffold_7.8_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 ............................. CAGATTGGCGCGGCGAGCTCTTCGGGGCTCGG 66 29 100.0 32 ............................. ACGGCGCGTGCTTTAAACAGTGCGTGTTCTGC 127 29 96.6 32 ............................G TGCACCCCACACAGAAACCAGTCCCACTACTG 188 29 96.6 32 ............................G TGGGCTCGCGAAGTGGTGGAGCCTGCAGCGCA 249 29 96.6 33 ............................G GAGTGCCAGGCGGTCAGCGGAGCGGATGCGGGG 311 29 100.0 32 ............................. CAATTCCCGTTGCCCGAGGGAGCAAGAATTTT 372 29 100.0 32 ............................. TCGTACCTAGAGCCGCTAACCCTCACGATTTC 433 29 96.6 32 ............................G GCGCAGCGGCAGGTGACATCGGAACCATCCGC 494 29 100.0 32 ............................. GGACTATTTGACTGGCTCTACCTTGTCTCAAG 555 29 96.6 32 ............................G TCCACAAAATCACCAGTCAGAGTGTCTGTGCG 616 29 100.0 32 ............................. TGCGATTTATCCGCCTTCCCCTCCATCGAGGA 677 29 100.0 32 ............................. GCCGCGTACCATTTGCCGTCGTCGGCTTTGAG 738 29 96.6 32 ............................T TGTGGGCGACGCAGCAGTCTGTGAACCGGCAC 799 29 96.6 32 ............................G CAGTGGGCAGAATACCCATTCCGTGAAACCTT 860 29 100.0 32 ............................. AAACCGGACAACAGGTCGTAGATTGTGGCATC 921 29 100.0 32 ............................. TGCTCGGCATCATCACCCATCTAGGGGCTCGT 982 29 96.6 32 ............................G TGGTGGCGCAGGGAGTGAAAGTTGACATGGTC 1043 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGTTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CGAAG # Right flank : | # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 498384-504469 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQUY01000002.1 Corynebacterium ulceribovis DSM 45146 A3ECDRAFT_scaffold_1.2_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 498384 29 100.0 32 ............................. AAGCATGATAGGCACTTGCATTAGGCACCTGC 498445 29 96.6 32 ............................G GAACAGAGGGAGATGAGGGAAGCATTGCCGAA 498506 29 96.6 32 ............................G AAGCCCGCAAACATGGGTTCAACAACTACATC 498567 29 100.0 32 ............................. TATCCAGGATGGAGAGCTCATCGGTCCAGTGG 498628 29 96.6 32 ............................T AGAGAGTTGAACGCTTACCTGTTTCGGTCCAA 498689 29 100.0 32 ............................. GCTCCCACCCGTTTGATGCCGGTCTAGATTGC 498750 29 100.0 32 ............................. ACGTCGCGCGCCTGCGAGCCGCCGAACTGTGT 498811 29 96.6 32 ............................G CTGCCGGCATTGAAGAGCTGACCGTCGACGCC 498872 29 96.6 32 ............................G GCGGGCTGCGGCGCGACTGCATTCGAAAGATA 498933 29 100.0 32 ............................. TTGACCGGCTCCGGCGGCTCTTATGCGCTGGC 498994 29 100.0 32 ............................. TGACTATCAATGACATGTGGCACCGTGAGCAA 499055 29 100.0 32 ............................. GATTCCGCAGCAGATGCTGTATGCCAAGGCTG 499116 29 100.0 41 ............................. GGCCTGTGTGGCCTTTTTTGATTTGCGGTTATCGCGGTCGA 499186 29 100.0 32 ............................. CTTGAGATGATGCGCCGCATTGAGCAGACCCT 499247 29 100.0 32 ............................. TCGGCCATCACGTCGCGCCGGTAGTGCGCCTC 499308 29 100.0 32 ............................. ACAGTTCTCGACGCACGCTTCGACATGGCGGG 499369 29 96.6 32 ............................G AAATCGAAGAACGCGTCCGCGCCAATCTCCAC 499430 29 96.6 32 ............................G GGCGTGGGCAAGGACGGCGCGGTCATCGGCGT 499491 29 100.0 32 ............................. TGCAGCTCGAACGGATTAAGGCGACCGCGACA 499552 29 100.0 32 ............................. GCGGCAAACGTGGCAAACGCAAGCCCTTGCCG 499613 29 96.6 32 ............................G GGCGAACGCCTCAGATTGTGGTGGTATCAGCC 499674 29 96.6 32 ............................G GCGATTACCAGAACGGTGGCAGTCAAAAATAA 499735 29 100.0 32 ............................. CTAGCGACACTCGACCGGCGTGCACTGAATCG 499796 29 96.6 33 ............................A GCCCTGCAGAACCTGCAGATGCAGGCCAACGCC 499858 29 100.0 32 ............................. TAATCGAGCCGACAGAATTTCGGATTTTGCCC 499919 29 96.6 32 ............................G CGCGACCGGATTCGCTGGACGTTCAGACTGTA 499980 29 96.6 32 ............................G CGGCTCGAAGAGATTCTTGCCGACGTGAGGGC 500041 29 96.6 32 ............................G TCTGACGTGGCTAAAGCGAAGGTCAGTTCTGT 500102 29 96.6 32 ............................G TTCATAGCTTGCCGTGTGGAAGATACGGGGGT 500163 29 96.6 32 ............................G AAACCTGCCGCGCAGCCGGCAGCACCGACTCC 500224 29 100.0 32 ............................. AATGACCTACTTCCGAATCCAGCCAGCAGACC 500285 29 100.0 33 ............................. CAGAGGGCAAGCCGACATTGGTGCCAGAGTCCG 500347 29 96.6 33 ............................G CGGCGTCGGCCATAGACACACTGGTGCCCGTAA 500409 29 100.0 32 ............................. CCACCGGCGACTACTGGGCAGACGGAGACAGC 500470 29 100.0 32 ............................. GCCTGCTAGACACGGGTGAGATGTGGCAGCTA 500531 29 100.0 32 ............................. GCGCCTTCCGGCGTACCACGTTTCGACTTTGA 500592 29 96.6 32 ............................G CCACTGGCCGTGTAATTCCGCTGCTGTATGGG 500653 29 100.0 32 ............................. GTGTCGAAGAAGCGGGAAAACGTCGACAGGTC 500714 29 96.6 32 ............................G AATTGGAATGACCCGAAGATGGGTGGACTTGG 500775 29 96.6 32 ............................G TGGTTCGCCACCGCGTTAGTGATGGCCACCGA 500836 29 100.0 32 ............................. AATCAGCAAATAGTCGTCATCATCGGCGACAT 500897 29 96.6 32 ............................G GCCACGTCCCTCTGATTTCTTTCCTCGATGTT 500958 29 96.6 32 ............................G CCCGAGTCTGCCCACCAGACGTGGCGCACGTC 501019 29 100.0 32 ............................. CAGGTTGTGGAGCCACTTGGCGGCAAGCTTGT 501080 29 100.0 32 ............................. TGCACGGCTTCCAGGTGGGTGTTGGTGTTCAG 501141 29 96.6 32 ............................G CTACCTGATGTGACAGAGCGGGCAGTGATGGC 501202 29 100.0 32 ............................. AAGCCACGCATTGTGGTCAACGGCGCATTTTT 501263 29 100.0 32 ............................. ATCATTGCCATTGCTGCCGCTGCCACGGCACT 501324 29 96.6 32 ............................G GTCAGAACCTGTCACTAGTCGACGGCGTGGCA 501385 29 100.0 32 ............................. CAGATTGGCGCGGCGAGCTCCTCGGGGCTTGG 501446 29 100.0 32 ............................. TACTCCCGCTCGCTGGGGCCGCAGTCGGTCGG 501507 29 100.0 32 ............................. AGCAGCTGCTCGGTAATCCAGGATGCGACGAA 501568 29 100.0 32 ............................. CAGATTGGCGCGGCGAGCTCTTCGGGGCTCGG 501629 29 100.0 32 ............................. AGCAGCTGCTCGGTAATCCAGGATGCGACGAA 501690 29 100.0 32 ............................. CAGATTGGCGCGGCGAGCTCTTCGGGGCTCGG 501751 29 100.0 32 ............................. ACGGCGCGTGCTTTAAACAGTGCGTGTTCTGC 501812 29 96.6 32 ............................G TGCACCCCACACAGAAACCAGTCCCACTACTG 501873 29 96.6 32 ............................G TGGGCTCGCGAAGTGGTGGAGCCTGCAGCGCA 501934 29 96.6 33 ............................G GAGTGCCAGGCGGTCAGCGGAGCGGATGCGGGG 501996 29 100.0 32 ............................. CAATTCCCGTTGCCCGAGGGAGCAAGAATTTT 502057 29 100.0 32 ............................. TCGTACCTAGAGCCGCTAACCCTCACGATTTC 502118 29 96.6 32 ............................G GCGCAGCGGCAGGTGACATCGGAACCATCCGC 502179 29 100.0 32 ............................. GGACTATTTGACTGGCTCTACCTTGTCTCAAG 502240 29 96.6 32 ............................G TCCACAAAATCACCAGTCAGAGTGTCTGTGCG 502301 29 100.0 32 ............................. TGCGATTTATCCGCCTTCCCCTCCATCGAGGA 502362 29 100.0 32 ............................. GCCGCGTACCATTTGCCGTCGTCGGCTTTGAG 502423 29 96.6 32 ............................T TGTGGGCGACGCAGCAGTCTGTGAACCGGCAC 502484 29 96.6 32 ............................G CAGTGGGCAGAATACCCATTCCGTGAAACCTT 502545 29 100.0 32 ............................. AAACCGGACAACAGGTCGTAGATTGTGGCATC 502606 29 100.0 32 ............................. TGCTCGGCATCATCACCCATCTAGGGGCTCGT 502667 29 96.6 32 ............................G TGGTGGCGCAGGGAGTGAAAGTTGACATGGTC 502728 29 96.6 32 ............................G GAGCAAAAATGCTAGATGTCATTTTATTTTTG 502789 29 96.6 33 ............................G GAAGATGAGGACTAAGGAATGCCAAACAAGGCA 502851 29 96.6 32 ............................G CCGACGGCAGCAAGCCCGAAGCTCATGGAGCC 502912 29 96.6 32 ............................G CTGTAGTGTATGCGTGTGACGAAGGTCATACT 502973 29 100.0 32 ............................. CTTCGCGCCCTGCGCGCCCGCTGTATGCGGCT 503034 29 96.6 32 ............................T CATGAAAATGCCTCCTCGGCGGTCTGGAAGGT 503095 29 100.0 32 ............................. CGGCTGCATTGAGCTGAGTTTGCATTACTTTT 503156 29 100.0 32 ............................. GTTCTCACCGACAAGCACCGCCTGCGACACCA 503217 29 100.0 33 ............................. CCCATCATGGACACCAGCTACAGAAGCCGCCTG 503279 29 96.6 32 ............................T TCCGTCGAATCTCGCTGCCCATGTCTTGATGA 503340 29 100.0 32 ............................. CTCCGGAATATGCTTGCGGTCGCGCACCTCGC 503401 29 96.6 32 ............................G CGCTAGGGGAATTGGGGCCGGTGTATGTGTCT 503462 29 100.0 32 ............................. TGACATGAACCCCGAACCGGAAGGAACCCCCG 503523 29 100.0 32 ............................. GCCGCCATGGCGTCGATGACTCCAGACCAGAT 503584 29 100.0 32 ............................. GGTCTGTGGAACGGCATGAAGGGCGCTTTTGA 503645 29 100.0 32 ............................. GTCATCACCGTCAGATCCATCTTCGTCTGCTG 503706 29 96.6 32 ............................G GGCGACGATAGCGCCGCCCAGAATGTTTTCCA 503767 29 100.0 32 ............................. CGTCCAGCACAAGCTGCGACAGTAATTGCCCA 503828 29 100.0 32 ............................. GGTCATATGGTCGCTGGTGATGATGACCTTGC 503889 29 100.0 32 ............................. AATGCTTGCTGCCAACGCTGCTCTTCACGGCC 503950 29 96.6 32 ............................G CTGCGCCATAATCTGCGCCGCATCAACCTGGT 504011 29 100.0 32 ............................. CGTTTTAGTCACCCCGCGCCACACATCATCTG 504072 29 96.6 32 ............................G ACATGCGGGAAGTCGAGTTTGTCCGTCTACGG 504133 29 96.6 34 ............................A GCATCCGAAGGGCGAGGAGCTTTCGCGCGTGCGA 504196 29 100.0 32 ............................. TCGAACCCGAACAGCTAGACAAGATGATTGCC 504257 29 96.6 32 ............................G GCACCACATGTTCAGCGTCATCGAACTGCCCC 504318 29 100.0 32 ............................. TTGGCGAAGTTCCTGGGCGTTTCCGAGGGTGA 504379 29 96.6 33 ......................C...... CACCGGCAACCCGAACACTCACCCTTGAAAGGA 504441 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ========================================= ================== 100 29 98.5 32 GTGTTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : AGTACCCGAAGGGTTGCGGGGTGATTTGACCAAGTGGCTGATGGAAATTGCTCCGGGTGTTTTTGTCGGAAACCCCAGTGCTCGAATCCGAGACTTGCTGTGGGAAAGAACCATCGAGCTTTGCAAAGACGGGCGGGCGCTACTAGTCTACTCGGCTGCCAATGAGCAAGGGATGGAATTTCGAACGCATCGCCATAGCTGGGAACCGGCGGATTTTGATGGACTGTCACTAATCATTCGACCTGTTCGCGCTAGCAGCGGCCGGGCGTACCCCCGCAGAACTGGATGGTCGACTGCAAGACATTTGCGTCGGAACCGGAAATGATGGGGCGGATGCCTCAACGAGACTGATATCAAGTGGGAGATTTCCGCTCATTCACGTGATGCTAGATCCCTGAAGTCTCATTCGACCCCGCGCCCTCTTGGGACTTGAAATTGACTGTTCACCCAAGTTAAATGATCTAGTGGAGCTCGGCATACAAACTTGCACTTCAGCAAGT # Right flank : CGATGTCCCATTGCTCCAAGGTTGCCCGCCCACTATTCTTTTGCGATCCCGAGAATCCGTCGTTTTGCGGCCTCGATTTGATTCTCAATATGCAGCTACGTAGGGGTGGTAGCTGCACTATTCACGCCCATTCGGTTCAGCGCTTCGCCTAGGTCTAGGAAGCACGAGATCGCCTGCGCGCAGCTAAGAAAATTACCGTCAATTTGCTCGCCACACACCCAACAGCCAAAGCTTCACCTCAGCTGCAAAATAAGCATTTTCGAACACACCTGCTAAACTCGCACCTATGCAGCGCTGGGTTCTTCATATCGACATGGACGCCTTCTTCGCGTCCGTCGAACAGCTCACCCGGCCCACCCTCCGCGGTCGCCCCGTCCTCGTCGGCGGCACCACCGGCCGCGGCGTCGTTGCCGGCGCCTCCTATGAAGCCCGCGTCTTCGGCTGCCATTCCGCTCAACCAATGTCGCAGGCCAAAGCGCTGCTGCCATGGAACGGGGTCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCAGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //