Array 1 108451-105490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBZ010000008.1 Salmonella enterica strain F2-21 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108450 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 108389 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 108328 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 108267 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 108206 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 108145 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 108084 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 108023 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 107962 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 107901 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 107840 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 107779 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 107718 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 107657 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 107596 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 107535 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 107474 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 107413 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 107352 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 107291 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 107230 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 107169 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 107107 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 107046 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 106985 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 106924 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 106863 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 106802 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 106741 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 106680 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 106619 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 106558 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 106497 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 106436 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 106375 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 106314 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 106253 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 106191 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 106130 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 106069 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 106008 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 105947 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 105886 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 105825 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 105764 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 105703 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 105641 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105580 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 105519 29 96.6 0 ............T................ | A [105492] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126083-124710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBZ010000008.1 Salmonella enterica strain F2-21 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126082 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 126021 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 125960 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 125899 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 125838 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 125777 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 125715 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 125654 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 125593 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 125532 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 125471 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 125410 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 125349 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 125287 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 125226 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 125165 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 125103 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 125042 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 124981 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 124920 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 124859 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 124798 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 124737 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //