Array 1 2985-4662 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSO01000025.1 Pectobacterium punjabense strain SS95 FAU241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2985 29 100.0 33 ............................. GCGTTACAGCAAAACGTATTGCGGGTGCGTTGC 3047 29 100.0 32 ............................. TGCGGGTTTTCTCAGTAATAAATGGGAGTTTT 3108 29 100.0 32 ............................. CAATTCAACCGTGCTTTCGCAGTCGTTGCCCC 3169 29 100.0 32 ............................. GCTCAGTAGCACAGTCCGCAGCGCGTAGTAAT 3230 29 96.6 32 ............................T TTGTGCCACTCAAATACGCCAAATTCAAACCC 3291 29 100.0 32 ............................. CGCTCGTTAGGGGTTAGAGGGAAATAATGAAA 3352 29 100.0 32 ............................. ATATTATCGACCCAACCCCCGAACCAAAAGAT 3413 29 100.0 32 ............................. GGTCTTTATCATTGAATGCTAGCCAGAGAAAA 3474 29 100.0 32 ............................. AGGTTTGTTTAACCCGGTGCCGCCAAAGAAAA 3535 29 100.0 32 ............................. AAATCCCAAGGCTGGATTAACCGCCTGAAAAC 3596 29 100.0 32 ............................. ACGACCCTCCTGTCGGCAAGTTCTCTGCCACG 3657 29 100.0 32 ............................. CGGTTTCTATTATTAACGAAGAGCGAGATAAA 3718 29 100.0 32 ............................. CATTCAGGGTAGGAGATGAATTCCTGATTACG 3779 29 100.0 32 ............................. GATGACTTCACCAACTCCTACGCTAAAATTTC 3840 29 100.0 32 ............................. TGGCTCTGTTGCTCATCAAAGAAAAACGCCCG 3901 29 100.0 32 ............................. TAATAAAGGTTTTCGTTAACTTTTGATTTCAA 3962 29 100.0 32 ............................. AAAAATTCAGTCCTTATGAACTTATTATCGAA 4023 29 100.0 32 ............................. TTTTTCTTCTTGCTCCATCAGATAACGGGTAT 4084 29 100.0 32 ............................. ATAATGCGTCTTTAATAAAGGAGAGCATGACA 4145 29 96.6 32 ............................A GTGGTGTGATGCATGGTATCTTCTGCGCTGCC 4206 29 100.0 32 ............................. TGCCGTTGGCGGTTTTCAGTAGTCGCTGCTGT 4267 29 96.6 33 ............................A GCGCAGTAAAGGCGCACATCACAGCGTTAATAA 4329 29 100.0 32 ............................. CGAGTTATACAACTCTAAACCTAAAACCCTTT 4390 29 100.0 32 ............................. TAAAGTGCGGCTAACTTAGCCACACTTGATTT 4451 29 100.0 32 ............................. CGCCTCGCCAGATCGCTTCCTGATACAGGAGC 4512 29 100.0 32 ............................. AACCCTGTGTGTCGCAATGACAAAGCGTTGCT 4573 29 96.6 32 ................T............ GTCTGCGCCGCCCGTTGCAGGTGTGCTCATAA 4634 29 93.1 0 ............T..............G. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCAGCTAATTATTTCCTGAATTACTTCACTTTAGTGAATATGTACTGATTACCTTCCATTTATGCCAATATATTTGTAATCATTGAAAATAGAGTGTGAAAATATTTTCGTATTTATGCGTTATATCGATATGAAGTTACGAAGAAAGTGTTAACCATTGGCGTATTACCGCATCATAAAAAATGAAAGTATAATCCTTGCTGTATCGCGCTGTGTCTAATTCAGTGACGTGATGTTTTTTCAGATGCTTGATATCAACGTGGAGGAAGCATGTATATCAGTCCTGAAAACAGAAACTTTGTCGCTGCGCTTACGTTGGTGATGAGTATCGCTAAATCTGGGGTGAAAACTGCCGGATACCGGTAGATCGGGGTGGCTCACGGTTACTCTCTTTTTCACCTTTTTAAAATCAATAAGTTAGCTATTTTTAACAACATGGAAAAATTGGTGGGATTTTTTCTGCTGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGTATGTTGGTCTAAATATTCCTCGTGCGGAGTCAAATCCCGCTTCTGGCTGGCGTGATGGCAGATTGCGTGTCAGTATTACAGCATGCTGTTTTTGTGCTCACCGTACTGGTGAGGTACGATGCCAATAATGTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCAAAGCGTTCCACAGAACATGCGGAAAAAGTGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGCGCTGTTCCTGCTGGTCAGACGACGCGCTATGATTTCACCCGCATCAGCCCTGCTGAACTGTATGAAACGGTTGGTAGCCTGGTTAGCAGCGGGCAGTTGGGGCGTGAAGACGGTTCCGCGCTGCTGGGTTTTATCTCGTCACCACGAGCGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCGATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 121618-121470 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSO01000004.1 Pectobacterium punjabense strain SS95 FAU221, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 121617 28 100.0 32 ............................ ATGCTAACCATCTACATCACAGAGCTAATAAG 121557 28 100.0 32 ............................ TGACCACGCCGGGCACCCGACCGTATACCGGG 121497 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGATATTTGAAGAATGCTCCGGCAATATCCAAGGTGCTTTACGACAATAAACAGAATCCAATAAAAGGGACGCTCGGGACCAATACGTTTGTGGCACGCGTGCAGGGCGGGAAATTAAAGTCCAACAACGAAATTAGAATAGCGACGTTATTTCGTGATGGCCCGGAAGATTTTCTACGCATGATCGTGATACACGAACTCGCTCACCTCAAAGAAAAAGACCATAACAAAGCGTTTTACCAGCTCTGTTGCCATATGGACCCAGACTACCATCAGTTGGAATTTGATATGCGAATCTGGCTCAACTGGCGAGAAATGGATACCACTTCGGTCTAAAAGCCTCTTTTACTACCCAGCACAGCTACGTTCTTCTATTTCTATACTACCTGTACGGCAGTGAACACGGTTCAACGGCATTAACGCTTTATTGCTCTTTTCTAAGCTGCCTGTACGGCAGCTTAGAAAAAGCACAGACACCGTTACGCCGGGTGGCAACCC # Right flank : ATCATCTGTTTAATTGCACCAACTATCATCTTATTCACTGCCGTGCAGGCAGGTATTCTCGGGATAAATCGCTGGCGTCACTTATTGGGCGCTATTCCCCATTAAGCGTGACGACCAGCGAGCGGCTCCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATACCCTGCCAGGTGCCGATGTTCAGGCGCCCATTGGTAATGGGGATCGTCAGACTGTTACCCAACAGGCTACCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCGTAAACATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTTTCATTCATCGTTAGTGCCGCCGAGGTATGTTTGATGAATACATGCATCAGTCCAACGTTTATCTGGCGCAGCGCAACAACCTGCGCCAGTATTTCGTCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-F [Matched known repeat from this family], // Array 1 58821-60499 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYSO01000052.1 Pectobacterium punjabense strain SS95 FAU268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58821 29 100.0 32 ............................. CACGTTCCGCATGCCCTCGCCACATCGACGTG 58882 29 100.0 33 ............................. ACAGTGCCACCGCGTTGGGGGTAGGCCACAATC 58944 29 100.0 32 ............................. TCAGAATTTAGCTTTTCAAACGATCACATGGA 59005 29 100.0 32 ............................. CGATCCATAAATTCCCGTTTTGCGTCTATTGC 59066 29 100.0 32 ............................. AACAGCAAGATGAACGTTTAACCCATCAAGAC 59127 29 100.0 32 ............................. TCATAATTCCATGCAGCGGCATTTGCTCAATC 59188 29 100.0 32 ............................. GTTTCAGGTTTGTATATGGTTTGCTGGAGGCG 59249 29 100.0 32 ............................. CGCCTGTTGGTAAATTGCCAAAAATGGATACA 59310 29 100.0 32 ............................. AAATTCTGTAGCCTGTTGAGAATGTTCTCGTC 59371 29 100.0 32 ............................. TATGCAGTGCCGTGGATATCAGTTCGAAATCG 59432 29 100.0 32 ............................. GGTCTTTATCATTGAATGCTAGCCAGAGAAAA 59493 29 100.0 32 ............................. CAAGCAGAATATGTTGACCTGTTAAATAAAAC 59554 29 93.1 32 A...........................A TTTTGCGACTCAGCGGGACCAGATGAAATAAC 59615 29 100.0 32 ............................. GGTAAATCATAATTTTCGTAATGCGAAGGTCG 59676 29 100.0 32 ............................. AAATGGCGAAGAAATAAAATTCGACATGACTA 59737 29 100.0 32 ............................. CAATTTTTGAGCTATACACGACCATGACTCTA 59798 29 100.0 32 ............................. CACCGTTGATCCTAACGTTTCGTTCCATGGAA 59859 29 96.6 32 ............................T GCATCGTATGAAAAATCAAAGCGCGGCGTTCT 59920 29 100.0 32 ............................. GTCTATGTGATGACATGGCTCAAGCGGAAAAC 59981 29 100.0 32 ............................. CGCGGTAACAGTAATGTCGGTCTGGAGTTCGT 60042 29 100.0 32 ............................. CGTAGGAACCGGATCTATGTGAATCGCTGGCG 60103 29 100.0 32 ............................. AGCAGGAGATTCTTTTCGGGGATGGGACCGGG 60164 29 100.0 33 ............................. GATAACCTCAATTTCTTCCCTACCCCGGCAAAA 60226 29 100.0 32 ............................. CACAGATAGATTTTTCTGTTGGGCGCTTACTA 60287 29 100.0 33 ............................. CTGATTTCCATTTTCATCAAATCCGTTTGTTAC 60349 29 100.0 32 ............................. TAGTGATTATGAGCACCATTACAGACCCTGAA 60410 29 96.6 32 ..G.......................... TGTCAGCGGATCGGACGGTCGGTTTTGGGAGA 60471 29 96.6 0 ..G.......................... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGATGATGCGCAGCCGCCCGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTGGTGACGGAAAATGTCCCGCCGCGCTTGCGCGGCAGGTTGGCGGTGTGGTTGCTGGAGGTTCGCGCGGGCGTGTATGTGGGGGATACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCTGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGTCGAATGCCGGTAGATCTGGACGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CGCAGTTCATCCATGTACGCCGCCCAATATTCGTGTTCCCCGCGCCAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //