Array 1 496802-497355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030834.1 Listeria monocytogenes strain 12 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 496802 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 496868 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 496933 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 496997 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 497063 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [497069] 497131 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 497196 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 497261 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 497327 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TGTAACAAGTAGTGTTATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACGTTTTAACTACTTATTATGAAATGTAAATGTAACAAGTAGTGTTATACCTGCAACAATACCAGTGTTTTAACTACTTATTATGAAATGTAAATTGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAGGTTTTAACTACTTATTATGAAATGTAAATGTCCACATCGACAATAAAAAACACATTGTATCACTTGTTTTAACTACTTATTATGAAATGTAAATCTGGTTACTCAACTGGCGACAGTAATACACCTCAATGTTTTAACTACTTATTATGAAATGTAAATTTTGGATAGGTTGTTTCTGATAAATAGGTTCACGGTTTTAACTACTTATTATGAAATGTAAATAGAAAAAAAACATCTTTCCAATTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 497543-498282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030834.1 Listeria monocytogenes strain 12 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 497543 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 497608 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 497673 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 497738 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 497801 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 497864 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 497930 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 497993 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 498058 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 498124 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 498189 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 498253 29 93.1 0 .......................A....C | C [498276] ========== ====== ====== ====== ============================= ===================================== ================== 12 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ACTCGATTTGACAGGTGCAGGTTTTAACTACTACTTATTATGAAATGTAAATTCGTTTATGACCTTATGAAAGAGTTAACACCTCGACGTTTTAACTACTTATTATGAAATGTAAATCTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTGGTTTTAACTACTTATTATGAAATGTAAATAAGTTCAAAACCTCCCACACCCGCTATGAATAAATTGTTTTAACTACTTATTATGAAATGTAAATTTCGTAATTTTACGATTATACTTTTTAGTCAAATTACGTTTTAACTACTTATTATGAAATGTAAATGTAACAAGTAGTGTTATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACGTTTTAACTACTTATTATGAAATGTAAATGTAACAAGTAGTGTTATACCTGCAACAATACCAGT # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 2639431-2636618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030834.1 Listeria monocytogenes strain 12 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2639430 36 100.0 30 .................................... GACCTCCGGATTATTTTTCACATCTGCCTC 2639364 36 100.0 30 .................................... CTGGACCTCACCTTTAATTAAACAATAGTC 2639298 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2639232 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2639166 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2639100 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2639034 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2638968 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2638902 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2638836 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2638770 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2638704 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2638638 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2638572 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2638506 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2638439 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2638373 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2638307 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2638241 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2638175 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2638109 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2638043 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2637977 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2637911 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2637845 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2637779 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2637713 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2637647 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2637581 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2637515 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2637449 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2637383 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2637317 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2637251 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2637185 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2637119 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2637053 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2636987 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2636921 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2636854 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2636788 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2636722 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2636656 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2636621,2636624,2636629] ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //