Array 1 8997-10113 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHVW01000026.1 Sporosarcina sp. A15 NODE_26_length_46566_cov_60.197445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 8997 33 100.0 35 ................................. TTTGCAAGAACGGCCTGTTGCTGTTGTATTAAATC 9065 33 100.0 35 ................................. TTTGACATCAATCAATGCGATGAAGCTAACACCGA 9133 33 100.0 34 ................................. GCATCCGGGTTGTTCACGATTCCTTTTACCTCGA 9200 33 100.0 36 ................................. TCTTTAAATGAAGAAAAAGAGTGCCTATAACGACAC 9269 33 100.0 34 ................................. AATCATGTCGAATTGTCTGAAAACCTCTAAAGCC 9336 33 100.0 33 ................................. TCGGTACTCACCATTAAACCCTTGCCAATTACC 9402 33 100.0 36 ................................. ATGTCTGCGGATAACAATGCAATCTTCTGTTGTCCC 9471 33 100.0 35 ................................. ACTGCATACTCATAATTATCACGGTAAACAACAAT 9539 33 100.0 35 ................................. CTGAAATAGTAGTCTAATAGCGGTCTGTGCGACTG 9607 33 100.0 35 ................................. ATCGTGTGGAGCGTCACCCATTAAACCTGTAGTGA 9675 33 100.0 35 ................................. TTGTCCAGCTACCACACGCGATATAATCAACTGCC 9743 33 100.0 33 ................................. AATGAAAATGAATTTAAAGAAGAAGTTACTTTA 9809 33 100.0 35 ................................. AATCGGATAAGGCTCTTTTAAAGCAATCTGTGGAC 9877 33 100.0 34 ................................. AATGACGCATTCCGAACATGAAGTGCATGAAAAA 9944 33 100.0 35 ................................. CCGCGAAGACGAGTCAACTGACGAATGACAGTGAA 10012 33 100.0 36 ................................. TGTCTCACACTTCCTTTTATAAGCGGCATCAAGCGT 10081 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 100.0 35 GTCGCTCTCTGTATGGAGAGCGTGGATTGAAAT # Left flank : TTTTCAAAATGAGTTGAATGAGTTGATGCTCAAATATTATCAGGCAAGCGAGAAGAGTTCTACGACAGCGAGTACGGTTGCCGTGACGATTTTGCCTCGTATCTAAGGTATTGAAAAAAATTCACTTGAATCTCCACCCACGTCATCTTCTACGATGAAAAGGAGTTCCATAAAAGGAATACAGCATGTAGAGGAGATAAATTATTGGAAACAAGTGTCTTTAGGAAACGGTGGCTTGCTGCTGGTATGCGTATCCTTTCCCTCTTTCTAACTTTTTTCCTGCCTTTCGCTTGATGCTTCATATACTCATTTGATTAAGGTTACTAATATGATAAATCATCAACTGCTATTTTGCGCGAACCCCAAGTGCCCATGAAATCCCTGGGAGGTTCGCGCATTTTTTCTGCATTTCTACGAACAAAAAGTGCTGATTATCAGAATGTATTCACTACTACCACAATTTGTAGTAGAATGTTAAGGAGATCACACAATATCTCGTA # Right flank : TTCTGAACTGTAGATTTTACGGTTCATTTTCACCGTCACTTTCCTCTTAAAATTAAAAAAGCTAGTCCTAAAATAAAACAACAAAAAAGGCTCTATCTATAGCAGCCTTTTTTTGATGTTTCCATTTTCATTTCGTTACCTCAGAGGATTCACTTATCTATTCTCCCGACCCCTCACAATCCTTCCGCTTCACTATCGTCTTACTACCCGAATACAACCCACTCGCCGATAACCCCATAATGAGCCCGCTTAACACCCCAGATTTCCAGTCAGTCGGAAACAAATAAAACATTCCCCCACCAATCCCTAAAGCTAGCGATAAGATCGGCATTAATTTTTTCGGTAGTCCATATAATTTTAGTAATTCCACTAATCCAATAATGACCGGAATTAGTACAATGTCCGTTACTTCCATAGCGTGTCTCTCCTTTTTCTTTCTATCTTATTTCCACTCTATGCAAAATGAGTCGGCGCTTTGCATAGAGTGTAGAAGAATTAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTGTATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4451-5294 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHVW01000019.1 Sporosarcina sp. A15 NODE_19_length_68483_cov_78.361518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 4451 33 100.0 35 ................................. TTTCTGCTAAACTGTTAGTAGAAAGGTAGGTGATA 4519 33 100.0 33 ................................. CACTTCCGTTAGATCGGTTGGACAACTTTATTA 4585 33 100.0 34 ................................. TTTGATCCGTTGGATGGTGGAAACGCAAAAGCGT 4652 33 100.0 35 ................................. GCTTCACGTTGTTGCATCTTGTAGAGTTCCCAGGC 4720 33 100.0 38 ................................. CGGGGTGGTTGAATGTGATACAAATACAACGTCGGATG 4791 33 100.0 33 ................................. CGATATACTTCCACTTCCGTTAGATCGGTTGGA 4857 33 100.0 35 ................................. ACGTTGCTCCAACTCTTTAATACCAAAGCTTAGGT 4925 33 100.0 34 ................................. CTTCAAAACTTCCTCTTTAATTGATTGAATAAAA 4992 33 100.0 33 ................................. CATGTCGTGCGATAATCGGCAATGCATTTTTGT 5058 33 100.0 36 ................................. CTTATAGCGTTCACAGAATCAAACAATTCGTCGATC 5127 33 100.0 33 ................................. GGGGGATGGCTATCAGCTGTCCTTTTATTTTTG 5193 33 100.0 36 ................................. TCCACGAGCTTGCCTCCGTAAGTTTCTACCTTGCCC 5262 33 84.8 0 ....T...............C...A.AC..... | ========== ====== ====== ====== ================================= ====================================== ================== 13 33 98.8 35 GTCGCTCCCTTTATTGGGAGTGTGGATTGAAAT # Left flank : CCAGGCAGCGGCGGCTTCTTCTGTGTGAAGGCCTTTATTTTCGGTAAGATATTCATTTTCTTAAGACATACCTAGTTTCGTAAATGTTAGTGGGTAACCTATATTATCAAAAACTACATTTATCTAATGGGCTTTTATAATGAGGTAAATTGGTTAATAAGAAAATCTGGATGGAGAACGGGCCGTGAGAAGAAATAGCGTAAAGTGTTACGGTGGTAAATGTATTAGAGGGCATTAAAAAAGTCTCATTATAAGTTTTGTTTATAAAGATTTTCACGTCTAAAGTTATTCAGAATATTTCGTTGTCATATTTTGTTGTGGTATATTGAATAGAGGCGCTATGTGCGAACCTTAAGTGAACATGAAAACTCTGGGAGGTTCGCGCATAATAGCTTAATTAATTTGCATTAAATGGTTTAAAATGAAGCCGAGTATTGTTGTTTATATTTCTGTCCACTAGATATTGTGGAATGAGATCTAACCACGCACAATATTTCGCA # Right flank : TTAAGTATACAAAAATGAAGCTCTTTAAGGAGAAAGACCTCTGTATATAAAAATGCAGGGGTCTTTCTGTTGGAGAATATTAAGTAATTTTGTCTTTTCCTATTTTGATATTATATTAATAAGAACTATTTACATGAAAAATTTTCTTGTTTTAAAATATTTAGTGGATAAACTGTAAAACGGTATGAAAGAGAATAAATGTTTTTATTGGTTTTACTCAACCAAATTTTAAATAATCTTCTATTTTTAATATTGATATGATACATTAGTAATATATTTTCTTGAAAGTTAAGTCATCCTAACTATGGAAGGACGCGATGCTATTGCTGATAGCACATATCCGGCAAAGTGATTTTGTTGAACAATCCGTTCAGGAACATCTAGAAGAGGTTGCAAAACTTGCTCGTTCTTATGGAGATTCAGTTGGGTTAGGAGCCCATGCGGAATTGTCAGGATTATTACATGATATGGGCAAGTTTACAGTTCACTTTACTACCTAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTTATTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 13648-15297 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHVW01000019.1 Sporosarcina sp. A15 NODE_19_length_68483_cov_78.361518, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 13648 33 100.0 34 ................................. TTCACTGGCGCCACGTGTTCCAATTGCTTCTTTC 13715 33 100.0 37 ................................. TCATCCTGCTTGCCCTCTTGATTGCGTAAGCACGATG 13785 33 100.0 33 ................................. CGATAATAGGTGCCATAATCACACCACCTCCGC 13851 33 100.0 35 ................................. AGGATCGCGTACCATACGACCAACAAGAATTATCC 13919 33 100.0 35 ................................. ATTTGCAACCATTCGGCAGCGCTTTTATTGTCCAT 13987 33 100.0 33 ................................. CATGTCATGCGATAATCGGCAATGCATTTTTGT 14053 33 100.0 33 ................................. ATCCAAGAAAGCTGGCGTTTCAACAAGTACATA 14119 33 100.0 36 ................................. AACCGATTGAAAGATCATCCCGCAAAAATAAAAATC 14188 33 100.0 34 ................................. ATCATCTGCAAGTGTTCTAATTCCAATATATTCG 14255 33 100.0 34 ................................. CGTTTGTTGTTCAGGGGTTGGAAGCAGCAATTCG 14322 33 100.0 35 ................................. ATCTTATTGCGCCTTAAATAATCATGCGTCTGTTT 14390 33 100.0 34 ................................. ATCTTCTATTTTTTGATAATCTCGTAGCCATTCG 14457 33 100.0 34 ................................. TTTGATGACGCTTTTGACCTGACAGAAGATGAAA 14524 33 100.0 34 ................................. TTCCAAGGCATCAAGTTTGCGGTCATGGATATGT 14591 33 100.0 35 ................................. AAATGCAGAAATATGGTGAAACACTTCGCTAAATT 14659 33 100.0 34 ................................. CACGCTTGCGTAATACTGGCAAACTCCCATCAAC 14726 33 100.0 35 ................................. ATCAAAACGGACGCCCCAGATTACGGTTTTATGCT 14794 33 100.0 33 ................................. CGATTACTACTATATTAGGAGGTTATAAACGAT 14860 33 100.0 33 ................................. CCGACAGTAGATACGTCTGCACCATCAAGAACC 14926 33 100.0 35 ................................. CGAGATAAAGTGGTGCAACGCTCTTTATGTGATAA 14994 33 100.0 35 ................................. GATTATACGTCTGTCAGCCCCTTCTCCCTGTCCGG 15062 33 100.0 35 ................................. ACCTTGTCCGGCAACGATTGCTGTATTTTGATAGT 15130 33 100.0 36 ................................. TGCAGTACCTACATAAGTTGAAAAATAGTGACAGCC 15199 33 100.0 33 ................................. AATACGGATCTTCACATCCACATTTACTTCCTG 15265 33 90.9 0 .......................A......T.G | ========== ====== ====== ====== ================================= ===================================== ================== 25 33 99.6 34 GTCGCTCCCTTTGTTGGGGGCGTGGATTGAAAT # Left flank : CGCGGAGATTTAGATGCATATCCTCCTATTTTAATAAGGTAGGTGCTGTAGATGCTCGTACTCGTAACCTATGATGTCCAGACGTATACAAGCAGCGGTAAAAAACGTTTGCGAAAAATTGCGAAAAAATGTGAAGAGTATGGTGTCCGTGTGCAAAATTCGGTTTTTGAGTGTATCGTAGACAGTACTCAATTACGACAATTGGAAATTCAGCTTGAAGAAATTATTGATCCGAAAGTCGATAGTCTGCGATATTATCGTTTAGGCAATAACCATAATACTAAAGTTAGGCATGTTGGGGCAAAACCAGCAATTAAAGTAGAAGATCCCCTCATTTTCTAATGTGCGAACCTTAAGTGAACATGAAAACCCTAGGAGGTTCGCGCATAATTCCAATGATTATTTACCTCATAATGTAATCATATGATTTGAAATTTAAAATTATATGCAGATAAAACTAGATATAGTAGTGTGCTGTATTAATGCGTCTATATCTTGCG # Right flank : GCTATAAAAAAACGAATCGGTGCTCCGTATGAATTATATCGCCCTCTTAATTGGGAACAGAGATTATTTTAAACTTACTAGGAAATCATCGATTACTACCCCTCACACTCCTTCTTATATATCTCTTCACAACTTACGGATTCACTTATGTGAATAGCTGTAAAATACGAAAAAGTGATTACTTCCTAATAGATTGCTAGATAAGGTAGCTATCCCATTCCTTAAATTAATCATTTATGTTGATAAAATATTGATAGCAAATATATAGAGCATTTCCATTGGGTTGCCCTCTTTTATTTCCTAAGAAATAATGTGCTTACATTAACGTGAAAAGACGGATACTACTATTCAATCCATCAAATATAGTATAATTCGTTATACAATATATAGTTATGTTAAGAGGTGGCATTACGATGTTTGTACAAGCGTGTAAACCATACTTCATTCTTGATAAAAAGTTCTGGTTTCTGTGGCAACTGGAATATGAACATATAGCGAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTTGTTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //