Array 1 2108494-2110352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009530.1 Methanosarcina barkeri 227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2108494 29 100.0 32 ............................. AGAGTGGTGAGAATCAGTATTAGTGATACACA 2108555 29 100.0 32 ............................. ACGCCACCAGCAGAAAGACCAACATTTGAGGA 2108616 29 100.0 32 ............................. ACATTGTATCACGAGTAACGATTACGCCATCC 2108677 29 100.0 32 ............................. CTTATGTACTGGAAGAGGAGACTTCGCAGGCA 2108738 29 100.0 32 ............................. GCAGCTAAGAAACGGAAATTGACATTAGCAGA 2108799 29 100.0 32 ............................. GTAACAACCATGTTAAAAACTAAGAACACACT 2108860 29 100.0 32 ............................. TGGGTAGTCATTGGGAAGCATTGCCCTGCGAA 2108921 29 100.0 32 ............................. CTGAAGAGGATTCTGAATAATATAGAGGAAAA 2108982 29 100.0 32 ............................. AGGCTGCCATTCCTGGGATAGTTATCCCATTT 2109043 29 100.0 32 ............................. GCACATCTACAGCAAAAGACGTTGAAAGTATT 2109104 29 100.0 32 ............................. ATTAGGAGAGTTCACAGGGTTGCAGCTAAAAC 2109165 29 100.0 32 ............................. AATACGCGGGGGTTCAACAGTGACTAGATATA 2109226 29 100.0 32 ............................. TTCAAATCGGTTGGGATGTAGAAGGAATCACA 2109287 29 100.0 32 ............................. TTACGCTTACTATGATTCAGCGGCATGCCAGT 2109348 29 100.0 32 ............................. ATGAAGTTGCAAATTCAATGTCATTTGAAGGA 2109409 29 100.0 32 ............................. CCTTTTCAACAGAAGATTTGAACGGTTCGGCG 2109470 29 100.0 32 ............................. TCCGACCCGAGGATCAAGCAAGGCTAATTCAA 2109531 29 100.0 32 ............................. GCCGTAACCTTACTTTTTGGCTCAGTATCAGA 2109592 29 100.0 32 ............................. TCATTTCGGAGGCAGTATAACCCATCTCCTCA 2109653 29 100.0 32 ............................. AATTCAGCAGATTGCAGATGCAATTACTAAAA 2109714 29 100.0 32 ............................. ATCTAATAAAGATGTGACCCTTACTATAGAAG 2109775 29 100.0 32 ............................. TTGATAGGTATTCTCATATTAGTTATATGATC 2109836 29 100.0 32 ............................. GCTTACCAGATGGATATGGTTCAGCTACAGAA 2109897 29 100.0 32 ............................. AATCCTGTAATTGCATCAAGATGCAAATCTGA 2109958 29 100.0 32 ............................. TTCCATATGCATCGGCTGGGACCACTGGTTTG 2110019 29 100.0 32 ............................. TTGATAGGTATTCTCATATTAGTTATATGATC 2110080 29 100.0 32 ............................. TATCTCTAAACAAACAAGAGTTTCACTAATAT 2110141 29 100.0 32 ............................. CGATTATTAAATGCCCAGACTGTAAAAATAAA 2110202 29 100.0 32 ............................. ATGGGTATAACCGTCAGTCCGCAGGTGAAACA 2110263 29 100.0 32 ............................. CTTGGGATAACAACGGGAATATCATAGCTGAA 2110324 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 GAGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TGCAGGTGCTCTTCCTATTCCTGAAAAGCCTCCGGAATCCATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAAGACAACGCCTCGGCTAAGAGGAAGACTGACGCTCTGGCTTCTGGAAATTAGGGCTGGAGTATATGTAGGAGAGTATTCGGTCAAGGTAAGGGACATGATATGGAAGAATGTAGAAACCGAATTCAATGATGGAAATATTGAAGGAAGCGCCATTATGATCTGGTCCGCAAGAAATGAAATAGGATTCGATTTCAAAGTTCTCGGCGAAAACCGCAGAATTCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATGCCCGAAACTAAAGTAGAAGAGTAAATTAACCGGAGATATTATGTTTTTGAAATATTTTGTTTTTTATATAAAAGATGTTATAAAAAACGTTGAATATAGTAGCGGAAAAGTTTTTCCGACAAATAGTATAAAAGACAAACA # Right flank : GTTAATGTAAGATGAGTCGCGCGGATTAAGGGAGAGTTCCCCACACATTTACTGTGATCTCACTTTAATAGGTGTTAGTACTATTGGTTTTCCTCTCAATGTCTTAACATAATATTAATAATTAAATGCAGTAGTTATTATCAAAATACTGTATTTTTCATATTATCTCAAGGGACATTCACCAATACAAATTTTAGTCAAACAATAATAAAGTATTTTTATGAAAAACAACTGTATAATAATAAATGAAAGAAAAGTATCCGGTTTCAGGATTTACAAGGGACAAAGAAGCCATTTATGTAAATGGAATCCGTATCTTTGTTCCTGTAGAATATGATAAGTTTAAGGCAGGAATTCCAAAAAAGAGACATAAAACTCTTTTTGAGCTATCAACAATCACTGGCATGAGGTATGCTGAAATTCAAAGGCTATACGATCATCCTGAATGGTACTCTGAGAGCAGGAACCAAATTCGTCTTAATGAAGATGCACAGAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2831877-2839733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009530.1 Methanosarcina barkeri 227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================== ================== 2831877 37 100.0 37 ..................................... TTATTACTTGTCTTTTTTATCTTTTCTACTGATTTCT 2831951 37 100.0 35 ..................................... TTATGTACACTGGCGAGGCCGTTGTTTGGCACTTT 2832023 37 100.0 38 ..................................... GTATATGTATTTCCATATCCTACTAATTCTTTGAAGAG 2832098 37 100.0 37 ..................................... TTTAATATGAAAGTGTATTCTGTCAGGCTGGGGTCTA 2832172 37 100.0 35 ..................................... ACGATGGTTTGTATTGTCCAGGTGTCGTCGGTGAC 2832244 37 100.0 35 ..................................... AATGATATAGAATTCTTACATTGAAGAACAGGCAT 2832316 37 100.0 36 ..................................... CCGGTTCATATGGTTCATCAGGTTCTACAGGGTCAT 2832389 37 100.0 35 ..................................... GAAGAAAACGAGTATTCAGTATAGGCCGGCTGTCC 2832461 37 100.0 34 ..................................... AGAATTATTTTCCCGCCAGTTCGTGACCATACCG 2832532 37 100.0 36 ..................................... CAGATTCCAAGGTTTCAGATTTTGATATTGGATCTA 2832605 37 100.0 36 ..................................... CACATTAAGGGCTTTGCACGTAAAGTCTCAAAAATG 2832678 37 100.0 35 ..................................... CAATATCACCAAGGATCTTCACAGATTCCGATAAT 2832750 37 100.0 35 ..................................... TGCATCTCCACAAAAAAAGAAAAAAATTAAAAGTT 2832822 37 100.0 35 ..................................... TTTGTTTATTTTTCTTTGAACCCCTCGCCCTAATA 2832894 37 100.0 35 ..................................... AACATATTATTTTTCCTCCAAAAAATTAATAGAAT 2832966 37 100.0 36 ..................................... CACTCGTAGTGATCTCCACAGTTCCAGCAGAATGTT 2833039 37 100.0 37 ..................................... ATTGGGCTCCCCGTATATGAAGGAGATATTATCAAAT 2833113 37 100.0 36 ..................................... TTATAGGATTTGATGTGTTGAGATGGGGAATTAGTT 2833186 37 100.0 37 ..................................... CTGATTCAGAAGCCTGAACGCCTCCTTTGTACCAGTG 2833260 37 100.0 35 ..................................... TCGCTTGATCCTTCTAATATCAAAGCATCTGACGG 2833332 37 100.0 38 ..................................... ATTCAAGAAAAGCCCATTTCCCAATTGATGTTCTAACA 2833407 37 100.0 35 ..................................... CTATGTATATAATGAGATCCTCACGGAGTGATAAC 2833479 37 100.0 36 ..................................... AATCAGGATACAAACCTTTCATGTCGTTGATAACTT 2833552 37 100.0 37 ..................................... TTAGAGCTACGGCACGCTTACCAGTCTTAGTCTTTTG 2833626 37 100.0 35 ..................................... CAAATTGCCGATGCTGCAACACAGCAAGCAGGTTT 2833698 37 100.0 34 ..................................... TTAGAGAGTATATTACATATGCTTTCAGATGAGT 2833769 37 100.0 35 ..................................... TTCTAAACCTTTTTCTTCTATAATAAGGAAGTATT 2833841 37 100.0 32 ..................................... TATAAAATGCGTGCATTGTATTAATTGTAAGA 2833910 37 100.0 39 ..................................... GTATATGTATTTCCATATCCTACTAATTCTTTGAAGAGC 2833986 37 100.0 35 ..................................... TCATTTTGACTCAATTCACTTACAAACGTGTCATT 2834058 37 100.0 39 ..................................... CAATATACTCTACCGACTCAGAGACATCCACAAAAAAGG 2834134 37 100.0 39 ..................................... AATTTTTGACTTTTTTTGACCGAAGTTTTAGCTTTCTTT 2834210 37 100.0 34 ..................................... TTTTTCATGCTCTTCTCATGGAGAGCAATATTAT 2834281 37 100.0 36 ..................................... CATCAGAATTAGTCCATGTATGATCAAACGTTTCTA 2834354 37 100.0 38 ..................................... AGATTTCAATTAGGAATAATGCAGCATCTTTTGAAAAT 2834429 37 100.0 37 ..................................... ATACAAGGCTCTTTGTATCTTCCCATGACCACGCAGG 2834503 37 100.0 38 ..................................... AAAAATCTTTGTATCGAAATTAGAGTAGGTGCCGGATA 2834578 37 100.0 35 ..................................... TATTGTCACTGCAAGCAGTGTACTAAAGAAAGGAA 2834650 37 100.0 38 ..................................... TACATGATATATAATCTTTCAATTCTTTTACAGAATAG 2834725 37 100.0 35 ..................................... AATGAAACTCCATTGCGTTGATTGACACAAATTAA 2834797 37 100.0 35 ..................................... AAACTCCGGTGACTATCCTGAGAACAACTGAGAAG 2834869 37 100.0 36 ..................................... CTTATCTCTTTTAGGTCTCCACCCTCCAATATTACA 2834942 37 100.0 35 ..................................... AACAAACATCTCAACCCCTAACCATCAAAAACTAA 2835014 37 100.0 36 ..................................... GTGAAGTCGGGGAATGGTACGAGAAAGAATGTACTA 2835087 37 100.0 39 ..................................... AATGTTTCAGATATGTTATCTTTTGGATCGTTACATTCT 2835163 37 100.0 35 ..................................... CGGTTATTGTTCATAATGATGTGTTGGAACCTGGA 2835235 37 100.0 36 ..................................... TTTTGTTGGCGGCCGTCATTGATTTTTGTAATTTAT 2835308 37 100.0 35 ..................................... AAAGCCGTTCCCCAGCAGCAGAAAACGGCATAATA 2835380 37 100.0 35 ..................................... GGTATTATAACAAAGAAACAAAAGAATTCGAATAT 2835452 37 100.0 36 ..................................... GCTCCATTATAACCCCTTTCTGTAAACTTTATTATT 2835525 37 100.0 37 ..................................... TAATAGTTTCTTTTGTTTCAATCGTAGTTTCTTCTGT 2835599 37 100.0 39 ..................................... TATTCAAGTATAAGACTACTTTCACTACTTTCACGATTT 2835675 37 100.0 34 ..................................... TCTAAATGTTCTTTTGTCATAACGGTCCCAGCAC 2835746 37 100.0 41 ..................................... TTAATTATCATCATATCAATGTATGCACCGATGGCATCAAA 2835824 37 100.0 39 ..................................... TACACACATAACAGGCGTTGCAATGTCAGCGGCAGCCAA 2835900 37 100.0 39 ..................................... TTCCTCATCATATAACATTTGTATATTTTAACATTATAA 2835976 37 100.0 35 ..................................... TTATGTATGTAACAGACAGAAGAATTGGCATCAAA 2836048 37 100.0 44 ..................................... TAATCTTCATCGTCATCATATTCATCTTCATCTAGAAGACTCAA 2836129 37 100.0 41 ..................................... CGTCTAACCTGTGCCGCCATTAGTAATTGAAAACCGTCTTC 2836207 37 100.0 35 ..................................... CAACAGGCTAAAAAGTCTGCTGCGTCTAGATATTC 2836279 37 100.0 35 ..................................... TGAAATGATGGTCTGCAATTCAATTGAACATACAT 2836351 37 100.0 37 ..................................... TCTGTATATTCACTAATTATTTCATAATAGTCTAAAT 2836425 37 100.0 38 ..................................... CCCAAAGATGCCAATCCGGGCACCATGTAGCACCAGTC 2836500 37 100.0 34 ..................................... TTTGAATTTATCCACGTTACACCTCCGTTGTCTC 2836571 37 100.0 36 ..................................... ATTAATACTCACTTCTTTTTCCAACCTTTTATAGGT 2836644 37 100.0 36 ..................................... TCTGTAGTGGTAGCAGTGAGTTCGGTAATTACGATA 2836717 37 100.0 34 ..................................... CAAACCTTGTAGCTTTGTCAGTTTCTTCAACTTT 2836788 37 100.0 37 ..................................... ATGACATTGAACTATAATAATCAGTATCGCCCTCAAT 2836862 37 100.0 38 ..................................... TCATTTTACACCTTACACAATTTCATCTATAATACCAT 2836937 37 100.0 34 ..................................... AAGGTACTGGTATTATGGATATTATTACAGTGAA 2837008 37 100.0 33 ..................................... AAAAATGTAATCATATTAACCCTTAATTAGCAA 2837078 37 100.0 38 ..................................... ACAAAGATCCCCGGTTTAAGGATATTACGGATGCAAAG 2837153 37 100.0 34 ..................................... TCTTGCCGTCCTGAATTGATGCAAATTTGATATA 2837224 37 100.0 44 ..................................... TGATTAAATCACATAAAGTGAGAACATATTACGTAGATATTCAT 2837305 37 100.0 35 ..................................... ACCGGTCTTTCGGATGAGCTCTATTATACGTAGTT 2837377 37 100.0 34 ..................................... TCTACACTACCCATGTTTAATATATTATATTATT 2837448 37 100.0 36 ..................................... GAGTTTCTTTCTTCTTCAGGAGTTGAATTTAGATAC 2837521 37 100.0 37 ..................................... CTTCCCTGGGAATCCTTTTTTGTTCGTTCTTTTTTCA 2837595 37 100.0 36 ..................................... TAAAAAAGAGGTTAGTATTCAAGAAAATCAAAAAAA 2837668 37 100.0 37 ..................................... TCTAACTCGACTTCAAATAAGTGAGCTGAGTCCTTTG 2837742 37 100.0 35 ..................................... GAAAATTAGTATAGTAGGTGTCTTTGTTTTACATT 2837814 37 100.0 35 ..................................... CACAACGAAATCCAGGACATAGAAGACCTGTTAAG 2837886 37 100.0 37 ..................................... CAATTTAGCACGATGGTTTGCGCCATAACTCGCATAT 2837960 37 100.0 37 ..................................... TGAAATAATTATGGATTCGTTATACGCAGTTTCTGGT 2838034 37 100.0 35 ..................................... CGAATCCGCATTGGATACCGTCAACGATGCAAAAA 2838106 37 100.0 36 ..................................... ACACCCTCACGGAAATATCTATAGATGGTGTTTTGC 2838179 37 100.0 36 ..................................... TCAACAATCTGTTCTATGTTGAAAAAGAGGAGGAAT 2838252 37 100.0 37 ..................................... AAAGTCAAGTAACAATCCTGAAAACAACTGAAAAAGC 2838326 37 100.0 34 ..................................... ATCCTGCCGACCAGGTATTATATCAGAAAACCGA 2838397 37 100.0 37 ..................................... ATAAAAGATTTTCCTGAGATAATACCAGGCACCAAAC 2838471 37 100.0 36 ..................................... CCCTTGATTCTTATATAGACACTACTTGGTATTTGT 2838544 37 100.0 35 ..................................... TTCAATCTCCCTTCCTGTCCATCTATAATATATTA 2838616 37 100.0 37 ..................................... CATTGGATTCAGAGATACACACACATCAAAGGCGGCT 2838690 37 100.0 38 ..................................... GAAGTAGGGTCGTTTAACTCATCCATTGCTTTTTTTAG 2838765 37 100.0 37 ..................................... TAATCAGAATAATTCTTATCAACTTTCCTGTGAAATC 2838839 37 100.0 34 ..................................... CAGTTAATTTTTCTGGGTCAAAAGTCCCGTTGAT 2838910 37 100.0 37 ..................................... TTGCATCAGACGGATGAGTAAAAACTCCATATTTCAC 2838984 37 100.0 35 ..................................... TTGCAGCCTGTAAAGTAGCTAAATATCGCATGTCA 2839056 37 100.0 38 ..................................... ACCTTCTGAAGATAATCCTGATTTAGCGCACGCCCAAT 2839131 37 100.0 35 ..................................... TTTTATGTCTGGAGAAATTAGCGCATTAGGTGAAA 2839203 37 100.0 38 ..................................... TACCTTGTATCTGTCGTATCCAGTACTTTTATAGAGTT 2839278 37 100.0 38 ..................................... CTACACCTATTGTTGTTTTTACCTCCCCTACACCACTA 2839353 37 100.0 41 ..................................... CACGATACATTCATATTAAAGCCTCTCCAATCTGGGGAAAT 2839431 37 100.0 38 ..................................... AGTTTTGCCAGTACTGCAGTCTTGAGCTCGTTAAACCT 2839506 37 100.0 38 ..................................... ACAGGGCGTCCTCTTGGAAAGCTCATGATAGGTCACGT 2839581 37 97.3 75 ..................T.................. ATACAGCTTTTGGGCATACATTCTCAGAAAACTCGATTCGTGAGCAATGCTTTTTAAGTAAGTTGTGTATATACT 2839693 37 91.9 0 .....C............A.....A............ | G,AAA [2839719,2839722] ========== ====== ====== ====== ===================================== =========================================================================== ================== 107 37 99.9 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ACCTACCAGTAGTGTTTTCAGTAATCTCAGATCAATTAAATAACACGATATAGAGAAAATATAACAATATAGTAATATTTTTTTGATAAAAATTAAGATGAATTAGACTACACTCGTTTTGTTATAAATACATTCCTAAATATATGTGATACAAATATGTTAATTTTATAAAATTAAATAATACAAAATATTATTTTTATTCGTTTGTTAGTTTTGGATTGAATTCAGTATCTGGATGAAGAAAAATAGTTTAAACTTGGTGTTTTTAAAAAATAACAAAAACATTATTGAATTAGGCCGGCTTTTGAATTTATTTAAGACGACTTAAAATACAAAAGTTAAATAGAAAGAAAGGCATATACCAGAATGTTTCCAAACTGCTAGAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTCAACCCCAAAAAAGGACTCATTTCAGGCCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTATATTTTTGCGAAGTATATCAGGCGATGAAAATGCTAGATTTCCTTAAAAATTTATTTGGTAGTAAAAATAATAATAAAACCCAAATAAGTAAGCCAAAATATGTTAAGGCGTTTGGAGATAGAGTTATACACTGTAACATGGCTCGCATATTTACCGGAAAAGTAACAAGTGTAGGTAACTGGGGTAATGATTACGAGAGAAATTATAGGTATAATGTAATATCGGGTAAAGTTAAAATTAGAAAGTTAAAAGCTATAACATTACATAGGAGCTGGGGTGGCACAATTAAGTTTTTTATGTTTTATCCTGTTACTGGATATGCAGAAATAGAAGCCAACGGTACAAGAATTATGTTACACAAATATAATGGATACGGAAAAAAGATGATTTATAAGCAGAAATTAAGATTATGATTTTTACTTTTACTAAGTAAGACACTTTTATAGTAATAGTTATCAGTTTGTGAATATATCTATTTTCAATATAAAATTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 2842776-2843555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009530.1 Methanosarcina barkeri 227 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 2842776 37 91.9 34 .............AG....C................. TCTCCAGGATTTAATCCATTCCACTCATAATCCA 2842847 37 100.0 34 ..................................... AATATTCTGGACATCCTTCGTCAAAATCGGTTAT 2842918 37 91.9 36 .............AG....C................. TTTTTTAAATTCACATAGCCTGCCTCAAACTGGTAG 2842991 37 91.9 47 .............AG....C................. TTTCCGGAGAGTAGATTATATAGCACTCTGGTAAATCTTCTTTTAAA 2843075 37 100.0 40 ..................................... TCGGAGTTTGGAGAATCTTATCGAAATCCTCCTCAAACTT 2843152 37 94.6 38 .............AG...................... CTCTCCAACATTTCAACGATTGTGTTATCGTTGTTCTT 2843227 37 100.0 38 ..................................... TACATATTTTCTAAGCATTTTGCTCTTCTTACCTCCGT 2843302 37 94.6 35 .............AG...................... CTTACTGCAGTGCTCAATAAAATGATGTAAAAAGA 2843374 37 100.0 38 ..................................... TAAATTTTATCAGAAATATGTACATTGCCAGTATAAGT 2843449 37 94.6 35 .............AG...................... TCTTTTCCAAAGAAAAGATCATTTACTCGTCTAGT 2843521 35 83.8 0 ...A.T.T...........-....-........G... | ========== ====== ====== ====== ===================================== =============================================== ================== 11 37 94.8 38 GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Left flank : TAAAAACCGAATTCTGAAAGTTGTACTTCCGTTTTCCTGAAGAATCACGCTTTTTTTCAATTTGAGTTCTTAGTTTTCAAAAAAGCAATATCAATAAGTAACATTTAAAATAACTGTCTTGAAGTATTTTAAAAGAACACCTTCTTTTTTCTTTTGACCAAATATATGAAATTCACAATTTTGTGAAACTGTCATCATTTAACTAAAAGTTAAAATGTATCTCTCATACCCAACTTCGTAAATTATTTTTTAAAAGTGATCATATATGTACATTATCAAATAAATAATTTTGATATCCTATAAGCGAAAATGCAAAAATTTAAATGGTACCCGTCCTTATATACCCTTTAGCTATTTGTCGACGACCAAATTTAGTTAACCAAAACAAAAACAAGTATATTTCAAAAATTAGACAGTTCAAACAAAAAAGAAGTTTTTTGATGCTTGTTTTTAGGTTCTAAATTTTCAGAGAATTTGTTGAAAATCAGGAAAACGGTCCT # Right flank : CTTTCTCTATGGATATCTGTCTCTGTTTTTATTGGAAAACAGTTCCAAGAAAACACGTATCAAGACCTCCAATTCGGAAAAAAGCCGAATTCTTCGTAGCTAAATATATCAAGCTCCGTAGATGATTGAAAATTAAGAATCATTTACGGAGGGACCTGAAATTCAGAAGCAAAAACTGGCTGAAATTCAACTGAAACTGTATAATAAAGCGAAAAGAAATCCTGAAAAGCGGTTTAAAAAACTTAAAAAGCTAATTTTGAAAGACGAGGTTCTTTACACCGCTTGGAAGAATTTGAATAGAAATACAAGAGGAACTGGTTTTGATTTTCTGACTATCCAACAGGTAGAGGCTTCAGGGGTTGAAAACTTCATCCGCTCGATAAAGACAGAACTTAAAAGTGAAAAGTACGCTTCTGGCGAAGTGAAAAGAGTCAAAATTCCAAAAAAGAACAGGGAGACAAGGCAGCTTGGAATTCTTACCTTAAAAGACCGACTTGTCC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Alternate repeat : GTCGAGAAGTAGAAGCCACCAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 3397179-3393183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009530.1 Methanosarcina barkeri 227 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3397178 37 100.0 35 ..................................... ATATTTCAGCTGTCAACTGTTCAACTTCATTTGAA 3397106 37 100.0 35 ..................................... AACATGCCTGAAAAAAATCTCCGTAGGAAAGGCCA 3397034 37 100.0 37 ..................................... CAATTATCAAGTCTAGCGCAATCACTTGTAATGCCAA 3396960 37 100.0 37 ..................................... AGCTCTGTAAGCCTGGTAATCTGGTTAGTTTTCCAAG 3396886 37 100.0 36 ..................................... CCTGAAATTGCAACGCAAAAATATAGTGTTGTTGAG 3396813 37 100.0 37 ..................................... TGTAATGAGTAAGGGAGTTTCAGAAAAGGAGTATTTT 3396739 37 100.0 35 ..................................... TCCAGGTTATTCCTCCATTATCCCTCCCGATGCAA 3396667 37 100.0 36 ..................................... TAATAACAGTTAGAATCATCAAATTGATTAGACATC 3396594 37 100.0 38 ..................................... ATAGATACAGACCATCAGAAGAATACCACAGATGCAAT 3396519 37 100.0 37 ..................................... TGGAGTTGGACAAACCATCAAAACTTTGTCCATACCC 3396445 37 100.0 34 ..................................... TTCAATGCGTCATCATAACTGGTATTGTTTTCAT 3396374 37 100.0 36 ..................................... ATAATAGATAGAAGTTTGAAACCAAATGAAAGGAGA 3396301 37 100.0 37 ..................................... TGTTCTGGCTTGTAGTCCTTTTTGAGAATCTTTTCTT 3396227 37 100.0 36 ..................................... TATTTTCCGTTTTATCCTCTGTATGAGTATCTACCT 3396154 37 100.0 38 ..................................... ACATTAGCTATAAGGGTATGGACTTGTCCTAAATGTGG 3396079 37 100.0 37 ..................................... ATCTGTACAAATTCAACTCCGTCCACTTCTGGTTTGC 3396005 37 100.0 34 ..................................... TCTAACACTTCATATACATACAGCCGTTTTTCAG 3395934 37 100.0 37 ..................................... GATACCAAGATTCTAAGATGCTTAAAATAGAGAATCT 3395860 37 100.0 36 ..................................... TAATCTTCGTTTGAGCATCTATTTCTATTGTGTCTC 3395787 37 100.0 36 ..................................... CAGACATATCGACCTGAAAAACTTCAATTTACCGTG 3395714 37 100.0 36 ..................................... ATGAATCTTCAATAGTTATTATATCAACTCCTTAGT 3395641 37 100.0 37 ..................................... ATATTGTATAGATGAGTCTCATCAATAGGTTCTTTTT 3395567 37 100.0 36 ..................................... GTTTTCTGCGTTCAATTGTATTTCGTTCAGTCATTT 3395494 37 100.0 37 ..................................... CATCTCCACTATCTAGCCTAATCTCAACAGGATAATT 3395420 37 100.0 37 ..................................... ATTATAAAAACACACTGAAAATAATAAATATATACAT 3395346 37 100.0 35 ..................................... CAAAAATATGACTCCAGAATCTACGACTTCAACAA 3395274 37 100.0 36 ..................................... ACTTTTTATATTACCTCTTCTATAATAACAAGTATG 3395201 37 100.0 37 ..................................... CCCTAGCTTTCTGTTGAATTGATGTTCCAGGAGGCAG 3395127 37 100.0 36 ..................................... TTTTATTGTGTATTATATATTACGCATGATACATTA 3395054 37 100.0 37 ..................................... ATGATTACAGCGGATTTTGAGATCTCTTCTATAAAGA 3394980 37 100.0 38 ..................................... TGCATTTGATACATCACATTGGAGCGCAGGTGGACCAG 3394905 37 100.0 38 ..................................... AACGGTTCAGCCATGTAATTCAGCTCCAAAAATTAAAA 3394830 37 100.0 36 ..................................... ATAATGTCTCTCGAATCTGAATTAGATCATCTTATG 3394757 37 100.0 41 ..................................... ATTTCTGAATGTCTTCAGGAGTGCCCCAACAAGGCCGCTGT 3394679 37 100.0 34 ..................................... TGGTAGCGGAGCGTGGATATATCTATAAAAAGGT 3394608 37 100.0 36 ..................................... AGTGTTAATTGTTTCACGAAGTGCTCTTTTGCAAAA 3394535 37 100.0 35 ..................................... AAGATTAGATATACATTTGGATTTCCTGGGATTGC 3394463 37 100.0 38 ..................................... CACCCTCCCCTTAAAAATTTGATAGAATTTTATAAAAA 3394388 37 100.0 34 ..................................... CATCGGTGAGTACATCAATGATATTGTTTAACTG 3394317 37 100.0 36 ..................................... ACCAAAGTTCCAGAATGCGCCTTTTTTCATCTCCAG 3394244 37 100.0 34 ..................................... ATACATGACTGCAAATGTAACTATTGTTTAACTG 3394173 37 100.0 35 ..................................... AAATAATGCGTATCGTAAGCCCGAGCGACCTTTTT 3394101 37 100.0 34 ..................................... AAATCAATATCAATCAATTGCATTATCACATATT 3394030 37 100.0 35 ..................................... CTAAGTAATGAATAAAACAAAAAAACGAAACTGAT 3393958 37 100.0 36 ..................................... GAGACCAGGATGCAGACTTTCCCAACACCGGCCCTA 3393885 37 100.0 36 ..................................... ATATTCTCTAAAGGGATGTCGATTCTACGTCTAGGC 3393812 37 100.0 38 ..................................... TCCCAGAGTATACACTTGATGTAGTAAAGGAAGCACTA 3393737 37 100.0 34 ..................................... CTGACACTGTCACGGCTGCCCTATGGCAAGGCAG 3393666 37 100.0 38 ..................................... ATAGATCTTTATATTCAACGCAAAATTCTAGATTATGA 3393591 37 100.0 35 ..................................... TTATAATAAAGAACGTATGGGCACGAGTCTATTAT 3393519 37 100.0 36 ..................................... AATACTAATTTTTTCTGTCCGTTTGAGGCAGATACT 3393446 37 100.0 36 ..................................... CCTGAAGGAGTCAAACCGAAAGCTGTACCCTCTGAG 3393373 37 100.0 37 ..................................... AAAATTAGAGGAGTCTGTTTTATAATGAATATCAGAT 3393299 37 100.0 43 ..................................... ACCAAAATTACCAAATAACACAAAAAAGTAATCGGGCGACAAA 3393219 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 55 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGAGAGACGTATTCATTGCTTCAAAACAGCATCATATAAAGGGAATAGTAGATGAAGTACTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAATATAAATTTGCTGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAGCTGGTTTTGCAGGCTCTTTTGATCCGGGAAAACTATAATATTGAAGTAAACCGTGCTTATATCTGTTTCACCAGAAGCAACAGTCTGGTTAAAGAAATGAAAATTACTACTTCTGATTTCAAAAAAGCTGAGAAAATTATTGGGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACTACCAAATCATCTAGAAAATGCGTAGATTGCTGTTACAGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : TAAAAGAACCAAGGTGCTTCTCACTAAAGTCTCGAACTCGGTATTAATTCCCGGACACTAAAGTGTATATCATTTCTCTAGCCGCTAGCCGTTTGGCCCTCTGCTTTTTTCCTGCCTGTCCGGTGCTGGTTGAGGAGCCAAAGGTGCAGGTACAGGTGAAAATAGGTTTGCAGGTAGGCCCTTCCGCCTTAAACGAATAAGCCGGTAAGGGAAGTTTCTTTGCCTGACAATATTCCTGCAAGGCAAAAATAGGGTCTTTTGACATGTTAATCGTCACTTCTTCATTACTGGCCGGCAAATCTATTATCTTGGTCTTCAAGTCTGGAACTGGTAAGCCCAGGACAGCAGCTAGCAGGTCTACGGATGCCCGCTGAGTCGCTCCTTTCTTTGTCAAGTCCTCGTATACGGCAGACCGGTACTCTATATTATTTACTCTGATAGCGCTCTGGGCAGCGAATACCGGTAAGTTACCACGAATCGTGTTGGTCACTTTGTATACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //