Array 1 15444-14073 **** Predicted by CRISPRDetect 2.4 *** >NZ_MU255055.1 Thiorhodospira sibirica ATCC 700588 ThisiDRAFT_Contig2.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 15443 28 100.0 37 ............................ CTGTTCGTGACAGCAGGGGAGGTGGTGATGTCGATGT 15378 28 100.0 35 ............................ CGGGTGCGAGACTAGGTGCCGGAGTGCTTGGTGAG 15315 28 100.0 36 ............................ TGATGGACGGTGACGGCCAACGTGCCGACGGGCACT 15251 28 100.0 36 ............................ GGCACGGGAGTGTCAAGGGGTTCAGGTGGTGCGCGT 15187 28 100.0 36 ............................ ACGGCAAGCGCCTCACGGTCATCAACACCTCGGACT 15123 28 100.0 37 ............................ GTGGGGTGACTAGACGGCACAAGTAGCGCATCAGGTC 15058 28 100.0 36 ............................ CAGGCCGGGGCGGCGGTGATTTTCCGCTTCCAGCAG 14994 28 100.0 37 ............................ GGGGGAAAGGGCTTTCGGTCTTTGATTTTACACCAAA 14929 28 100.0 36 ............................ AAATCCGGGAACCCGGCAGGCACCCCAGAATGAAAC 14865 28 100.0 36 ............................ GGATGTGTAGGCTTAGCTGCCCTATAGGCGCGCAGC 14801 28 100.0 35 ............................ CTGCTAGAAACAAAGGACGCGCTGATAGAGCGATC 14738 28 100.0 36 ............................ CCTTCGGAAGACCTTCGGAAGACCTTCGGTCCCGAA 14674 28 100.0 35 ............................ CGGGTCGCATACTCGGATTTCGTCCGCTTCGATGA 14611 28 100.0 36 ............................ CCAGGCTGCCTGGACGTGATAGCGGTATTTAAGGAT 14547 28 100.0 35 ............................ CGGGTCGCATACTCGGATTTCGTCCGCTTCGATGA 14484 28 100.0 36 ............................ GATGTGTAGGCTTAGCTGCCCTATAGGCGCGGAAGC 14420 28 100.0 37 ............................ CGTATGTGTCGCACGCGCTCAACCGCAAACTTGCCGG 14355 28 100.0 35 ............................ CGCCAGTGCCCTCGGGATCAAATACCCCTCCAGTT 14292 28 100.0 36 ............................ TCCGTACAAACCCGCGCTCAACATCAACATGATAAC 14228 28 100.0 36 ............................ GATGTTTAGGCTTAGCTGCCCTATAGGCGCGCAAGC 14164 28 100.0 36 ............................ ACTTCAGCCGCCCCGCTGATGCGCCCGCCCAAGACT 14100 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 22 28 100.0 36 CTCATAACCCCTCATGGGGATTCGTAAC # Left flank : AGCACCCTGCTAAGGCGTCACCAGCAACGCCACAGCGTACAAGTAGTCAACCGGGCCTTGGTGCGTTTAGGCTGGTTACAAGACATCCGCCGCGAAACCCCACGGGGTTTAAAACGGGTCAAGCAATTGGTCGGTGAAGGTTTGTGTTATGGCAGAAACCAGCGCAACCAACCGCTGTACTACGCCGTGCAGTTTCCGGAGTTATTGCGAAGGATTAGCGGGTATTTGCGTTAAAAAAACCTGGGAGCGCGGAGCACCAGCTGTGCACCGGGGGTGGTTATCTGGATCGCCGAGTTGTACTCGGCTGATTTTTAAACCCTTGTCCCGACCCGCCGAGTGCAACTCGGCGCTCCCCGTGGCGGCATCTTCCAGATGCTGCGTGTGGCGAATGCATCTTGCGTTGTGGCGGCATCATCTTGATGCCGCAAAAAAAGCGGCACCTGGAAGGTGCCGCCACGTCAAAACTTCCCTCTTTTTGCCGAATTCATAACTCCTCATGG # Right flank : CCCTTATCCATAGGCATATTTGTGCATCCATTCGGTGTAAAACCAACACGAAATAGCCCAAAACCTTGTATGAGCGACTTCAATGCCCCAGGCTTTGCGCATTATTTGGCATCGAAGCTTGTAAAAGCAACTGCTTTGAGCAATTCGTGCATTTTTATAAAACAGAGAAGTCCTGACGGTGTTCGTTGTGTGCCTGTCGCTGTAAAGGCCCTTTCCCGCTAGTGCTTTTTAAGAGCCGACTGATTTCAATGTTGTGCCGGTTGGCCGTCAGAATTTCAACGACACGATCTTCGTCGTTCATTAAGTCAGAAAGCTCTTTACGCAATGCAAGGAGTTTGGATTCACTGATATCGCCGCAAAATACAGAGTATTGTGTGTGTTGCAAATACCTTCGTAGTAATTTTTTAAACTTATTGGTTCGTTTGGCTTCAACATCATACATAATAATCGCAAACATGCTCAAACTCTCCGTTTAAATGATTGATATTCATCAATACCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1290485-1289119 **** Predicted by CRISPRDetect 2.4 *** >NZ_MU255056.1 Thiorhodospira sibirica ATCC 700588 ThisiDRAFT_Contig4.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1290484 32 100.0 35 ................................ AGGAAGCACAATATTGATCGGGCCAGCTTGGCCAG 1290417 32 100.0 33 ................................ CCATTTATTTGCAGGATCGCCTGTATAATTCAT 1290352 32 100.0 34 ................................ ATTGCGATATGGATGTTTTCGATACCGCCTTCGA 1290286 32 100.0 34 ................................ TGTACCGACACCACCGGCGAGACGCTGGCGGAAA 1290220 32 100.0 36 ................................ AGCTTTGGGCTATGTCTTTGATTCCCGATCCCAAAG 1290152 32 100.0 34 ................................ CTCCTTGCACCCATGATCTAGCAGGCGCTTAATT 1290086 32 100.0 33 ................................ GCTCAAGCTGGCACTGAGCGCAATCAGAACTAC 1290021 32 100.0 34 ................................ AATTGCCAGCCGAGACACTGCAAGAATCCAGTAC 1289955 32 100.0 35 ................................ ATCAATATGCTTGCCGAAATGGCACATATTGCCAC 1289888 32 100.0 35 ................................ CATGCCACTAGGATCGAGGTTTGATAGCGTATCCA 1289821 32 100.0 35 ................................ TGTACCCTTTAAACTGATCTTGGACAACTCCATTA 1289754 32 100.0 37 ................................ TTTAAGCTGTTTTCCATGCGGTCACAGGCAGATCGCA 1289685 32 100.0 35 ................................ CTTAATGCATGATCCAACATGGCGCTAGTTACTTG 1289618 32 100.0 36 ................................ GGCCTGTTCAGCGGCGCTCAGCTCGGTCACGACCCG 1289550 32 100.0 35 ................................ TTTGCGCATGGTGGTGATCACCGTGTCGCATTTGC 1289483 32 100.0 34 ................................ TGATATACTCGCATCTTTAGAATATCGCCATCAA 1289417 32 100.0 34 ................................ CTTAACCCGTGATCCAAAGCGTTTTGAGTTGCTG 1289351 32 100.0 35 ................................ CTGGAGAATGAGGCTGGCAGTGAAGACATGATCTG 1289284 32 100.0 34 ................................ ACACGGGAACAGCGCAAGGCACACGGGGCAGCCA 1289218 32 100.0 36 ................................ ATCCGGCCTCCACACGCGAAGCGTAACGCCTCTATT 1289150 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 21 32 100.0 35 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : ACAACTTTGCGATTCGACTTCGACCCCGACCATGGAACGCGAAACCTTCGCGCTTGTAGATAACCTATCTACAATGGAGAATTCTGATAAACAATGAAGAAAAAATCAAGAACTTTTTTTTGCTCCGTCTTCGAGATCGAAGTAGATGCAGCGCAGTGGGCGTTCCTTAAGGACCGGTTGTGCAAGCTGATCGACCCTGACGAAGACAGTTTGCGGTTTTACTACCTCGGACGCCACTGGAAGACTCGGGTCGAACACATTGGCGCAAAACCAGTACTGGACCTCAACGGGCCGCTGATTTTGTAGTCATTCGTCACGACGATCGCGAACCCCAAGCGACCAGCAAATTTTCGGTAGATTCGCAAAAGCTTAAAAATTAATAACATAGAAATCCTCTTGCACGTCCGCAGGCCAAACACGAGCGTAATCCGAAAGCTTGTATAGAGGTTCGCGGAAATGCGATGATTTATTCCGCCGATTCAAGCAATAGAAAAGGCACA # Right flank : GCATTTTGCCAGCCAGGAGCGAGATAAACTGATGTCGCGCCCCACGCGGGCGCAATGTGGCGGCGGCTTCCCTGCCTGCGCCGCATGCGTCTCGGCAGGCAGGCAGCCGTCACTTTCTTTTTGCGGCATCAAGATGATGCCGCCACGAAATGATGCCGTCACACGCGCCCACAAAAAAGCCCACTTGCGTGGGCTTTTTTAAAACAAGAAGGTAACGGGGAGATCAGATTACGCCCATGGCGACCATGGCGCTGGCTACTTTCAAAAAGCCGCCGATGTTGGCACCGACAACATAATTGCCGCTGGCGCCGAATTCTTCAGCGGTTTCGTAGCAGTTGCGGTGGATGTCTACCATGATTTCCTGCAGGCGCTTTTCGGTGTATTCAAAGCTCCACAGGTCACGGCTGGCATTTTGCTGCATTTCCAGGGCGCTGGTAGCTACTCCGCCGGCATTGGCGGCTTTACCGGGGGCGTAGGCTATACCGGCCCGCTGGAAGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1559679-1553205 **** Predicted by CRISPRDetect 2.4 *** >NZ_MU255056.1 Thiorhodospira sibirica ATCC 700588 ThisiDRAFT_Contig4.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 1559678 37 100.0 36 ..................................... CCCACCCTGGTCGGCGCAATACCTGGGCGGAAAACT 1559605 37 100.0 35 ..................................... CTGTGCAGCTTGTGCGCATGGCTTGCCGCTCGAAT 1559533 37 100.0 36 ..................................... ATCGCTAAAGCGCTTTAAATGGAACAACTCCACGGG 1559460 37 100.0 39 ..................................... ACCAAAGATGAAGTGTTTCAAACCGTCAAAGACCGCAAC 1559384 37 100.0 36 ..................................... CATCACTTGAAAGCGCTGCAAATTATGTGATTAACA 1559311 37 100.0 36 ..................................... AAAGCTTGCACTGCAGCTACTTCTATCGGTGAAATG 1559238 37 100.0 36 ..................................... ATGAAATTTCGCAGGCGTCAAAAGCCTTAACAAGCA 1559165 37 100.0 34 ..................................... CAGTACGGTCAACTCCTTAGCGGTCAAGTCAATT 1559094 37 100.0 36 ..................................... CAAGATGCGGCATTCTGGAAGTCAAACGCTAATGAT 1559021 37 100.0 37 ..................................... AAAGAAATTCCCCGGACGGATAGACAAAACTCAAAGA 1558947 37 100.0 36 ..................................... ATCTAACATCCACATCACACGCAATGTCTTTCCCGA 1558874 37 100.0 47 ..................................... CCTTGAGACCCGGCGACCACAGCAATTGCCGCTTGCGGTTTAAACCC 1558790 37 100.0 34 ..................................... TTACCTTATAGCTGGGGAGTTTGCTTTTTGGTTT 1558719 37 100.0 35 ..................................... AAGTTGTTTTTGGTGGCGGATGAGGTGGTGGCGCG 1558647 37 100.0 35 ..................................... GCAAGCCGCTGGATCGTGGCAAACACAGCCGGATC 1558575 37 100.0 35 ..................................... TGCTGTGCCGGGAAGCGATATTCCGCACCTGCTCG 1558503 37 100.0 36 ..................................... CACCTCAGCGGCAAGTTTGGCGTGCTCGGACTTCGC 1558430 37 100.0 37 ..................................... CTCAATAGACTGCTTATGAATGGCGCTATATTGCTGC 1558356 37 100.0 35 ..................................... GACACCCGACCGTGTGATCCGGCGCGGCACGAAAA 1558284 37 100.0 34 ..................................... CGAAGCCTGGCCAGTCGCTCAATTGTCTCGAAAA 1558213 37 100.0 37 ..................................... GCCGATCGCGGATGGCGGAATGCGTCAAACTCGGTCA 1558139 37 100.0 35 ..................................... CGACGTGTGCGAAATCCATTGAATGAGGTTATCCG 1558067 37 100.0 35 ..................................... GCCAGGTGCGGCGTCGATAAGGAGGCAAACAAGCG 1557995 37 100.0 35 ..................................... CTTGATGCGGCATTCTGGAAGTCGCACGCTAATGA 1557923 37 100.0 35 ..................................... CGCATTGGTTTTTACCTGTGTAGGAAAAAACCTGC 1557851 37 100.0 35 ..................................... CTTTCAATTATTCACAGTCACATAAGAATATAAGA 1557779 37 100.0 36 ..................................... CCTTGGTTCTTCGGTGGCGGTCTCTGCGTATTTGGC 1557706 37 100.0 38 ..................................... GCTTAGCTGCCCTGTAGGTCGCGCTTGCGCGAGCCGCT 1557631 37 100.0 37 ..................................... TGGATATGGTTCATCCGGAAAAAACGCCCATCCGGCT 1557557 37 100.0 37 ..................................... ACGTGGCGGACAGCATGAAAGGGCATGACCGCCTGGG 1557483 37 100.0 35 ..................................... GTAATTCCTGCGGAATGTAATATCTCTAGCATATC 1557411 37 100.0 36 ..................................... CGCGGTCGCTTGCGACGGGACCCGGAACCTGTCTAA 1557338 37 100.0 36 ..................................... ATCCAGATAAGACCGATAGCGACAGCTGATAACAAG 1557265 37 100.0 37 ..................................... GTCATGCCCGCATAGCTGCAGCCGTTGTGGGCCGCTA 1557191 37 100.0 37 ..................................... TCCAGCCATAGACGGTGATACAACTTGCCTAGCTCTT 1557117 37 100.0 35 ..................................... AAAATATTTTCTGGATTGTAGGCAGTAAGCGCCCC 1557045 37 100.0 35 ..................................... TCAGGATCGGCAAGCTCAGTAGCGGTTGGGGATTT 1556973 37 100.0 37 ..................................... ATTAAACTGGCTTTCAGCTTCGCGTTCTCACTTTTTG 1556899 37 100.0 35 ..................................... CAGACAAATGTTCCTCCATTCCTGCCTTCTACAGT 1556827 37 100.0 36 ..................................... CTATATGTATGTTTTCCATCCCGCCTTCTATTGCCA 1556754 37 100.0 35 ..................................... ATAACCTCTTGGATGCTCTCCCTTACCGCTGGCTT 1556682 37 97.3 37 ................................T.... GATAAATCAGGCGACGATCCTGATGACTTACTAATGA 1556608 37 100.0 36 ..................................... CATTCATCAGCTCGATCAACAGTGCGCCCGCTTGCT 1556535 37 100.0 36 ..................................... TAAGTAGGAATCAGGATACCCGTTTCAGAATCCTGA 1556462 37 100.0 37 ..................................... CAAATCACCTCCGGATCAGTCCCCGCCGGATCAAAAC 1556388 37 100.0 36 ..................................... TGCAACGGTGTGCTGCGGGGTGCGGTGGGGTGCGGT 1556315 37 100.0 36 ..................................... CGACGGAACCCGGAACCTTTGGCGCTTCCAAGGATG 1556242 37 100.0 36 ..................................... CAATTATGTATATGGCGGACGCATGGGAAACACGCA 1556169 37 100.0 35 ..................................... TCTGGGAGAATATGCGTCGCATCGCGAATTTATCT 1556097 37 100.0 36 ..................................... TTCTTAATCGCATGCGAGGCCAAAGCCTCGGCTTAA 1556024 37 100.0 37 ..................................... TCCAGCATGGCATCAATATCAAGCCACTCCCAAACAA 1555950 37 100.0 36 ..................................... TATGTACAAATAGTAGGCCGAATAATGCGCAGTTTG 1555877 37 100.0 36 ..................................... TCGCTATATAGCGCACCAATCATGTCCAAAACTTGC 1555804 37 100.0 36 ..................................... TGTTACGCCTCCGATTAGGAGGGCGGGTAAAAATGC 1555731 37 100.0 37 ..................................... CTGCGAATGTAGTAATCCAGTATGTCTTCCAGCTTTT 1555657 37 100.0 36 ..................................... ACCACCCCGCTCGGCGCAACACCTGGGCGGAAAACT 1555584 37 100.0 37 ..................................... GTGAAGCTTGATATTCGCCTAATAGCTGCACAGCCAG 1555510 37 100.0 34 ..................................... TCTGTAACCACTGAGTCAAGGCTGATGACGGTGT 1555439 37 100.0 36 ..................................... GCTACCATGAAACCCATTAAAACATAAATCGCGCTG 1555366 37 100.0 37 ..................................... CGAAAAAGATGGTATCATTTTCGTCAAAGTTTTCAGG 1555292 37 100.0 35 ..................................... TCAACACCGGTTACGGTGTCGCCGTGAGCGATCGG 1555220 37 100.0 37 ..................................... ACGGGATGCCGTTCACTAACATGCCTTGCCGCATAAA 1555146 37 100.0 38 ..................................... TGTGCCAGCATATAGACTTGGCCATCCTCATCGTACAG 1555071 37 100.0 37 ..................................... TCATCGTCGTGTAGCATTCTTGCGATAGTTATAATGC 1554997 37 100.0 35 ..................................... CCTTCGCCCTGCGCGCCGATCAGGCAAAGGTCTTG 1554925 37 100.0 34 ..................................... CTGTAGTGATCCCTGTTTTGTTGCTTGTCCATGG 1554854 37 100.0 35 ..................................... TCAAACTGATTACTGAATTTATCTCCTACGCGCAC 1554782 37 100.0 35 ..................................... TTTGTCAAAGGGGTGGGGTTATGCCGCCTGCCGGG 1554710 37 100.0 37 ..................................... TGCTTGTTTTTTCCAAGGCTGCAGCAAATCCAGTAGC 1554636 37 100.0 36 ..................................... TGCGTCACGCCAAAGCATCGCGCCGCAAAAATCGAT 1554563 37 100.0 36 ..................................... ACTGAACGCCGAGCGTTTCCATCAGCTGAGTAAAAA 1554490 37 100.0 37 ..................................... CATCGAGGCTTACCCGCTACGCTTTGCCGCCCTGAAT 1554416 37 100.0 37 ..................................... CATCGAGGCTTACCCGCTACGCTTTGCCGCCCTGAAT 1554342 37 100.0 38 ..................................... ACATGGGTTTACGAATAATATCGATAATGGTTAAAAGG 1554267 37 100.0 37 ..................................... ATCCCACCCCGTCACCCCAAGCATCGTCGCCAGCTCG 1554193 37 100.0 35 ..................................... CCAACTGTGTGCTTGCCATCCTCATCTTTCATGTA 1554121 37 100.0 35 ..................................... CCTTTTATGCGCTGAATCGCGTTTTAAGCTATTTT 1554049 37 100.0 37 ..................................... TTTACGCCTTGCGGCGTTTCCAGCACGTTCGCCACAA 1553975 37 100.0 35 ..................................... AGCTATTTTGTGCGCGCATGGGTTACTTAGTGTTA 1553903 37 100.0 37 ..................................... CTCAACAGTGCAAATGCGAAGTCATTCTTTTCCCAAA 1553829 37 100.0 36 ..................................... ACTGGATAAGTCACACCATACGCGCTAGGTGTTGAT 1553756 37 100.0 38 ..................................... ATTATCCTGTTTGTCTGTGTTCTGAATGTCATTATGTC 1553681 37 100.0 36 ..................................... ATTTCGGCGATTTCGTCATGCTTGTCCGGCTGTGCT 1553608 37 100.0 36 ..................................... CTGGTGGGCGCGGTGCAGCACTCACGCTACAAGCCT 1553535 37 100.0 35 ..................................... AATCCTGCGATAACTTCCAGATTCTTGCGTTCTTC 1553463 37 100.0 35 ..................................... ATAATTTCGTCACCTGCAGGGCATACCAGGATTTG 1553391 37 100.0 40 ..................................... ATCCATCATCACATCCGCGCGCTGGTTGGTCGGCATACGT 1553314 37 97.3 36 ....................................T ATGCCGAGTAAAACTCGGCGCTCCACTCAGCAAATC 1553241 37 83.8 0 .......T.......T.......G...TA...T.... | ========== ====== ====== ====== ===================================== =============================================== ================== 89 37 99.8 36 GTTTAAACCCTAAATCCACTACAACAAGGATTGAAAC # Left flank : GGAGCGCGGAGCACCAGCTCCGCACCGAGGCCGCAGGCCTCGTGGGGTTTAAAGCGTATCAAATGCGCAGCGGGTGCTGCGCGGTCCCAGGCAGGCGGCATCAAGCGGATATCGCCAGAAAACAGCGATTAAAAATTAGCACCCCGTGCATCGTTGATTAAGAAACGGGGGCGCTGTGCTCCAGAAAGCCTTTTATTGCGATATACCGCGACGGCTATAAAAAAAACGGCCCGAAAAGGCTTGCATTAAACGAAAATTTCAGTAACATCTCAGACCAGTGCCTTTTTACCAGGGCGCGACTGCTGAGACAAAAATATTGAGCTGCTGTAGGTGGCACGCTTTAACTCTTTGAAGGAAAAGCAAATAATTCGCTTTTTTCGATGTAAAGACCATGTTAAAAAGCCTTGTTATCCCTGTTTTTTTATGAAAAAAGAGCCCAAAAAAAGATCTGCAATAAATCCTTATTTGATTGATTTTAAAGCGATTTACTACCAAATGCG # Right flank : TAAGGGGTGTGGTTTTTTTAACGACAGTTGTGACTGCTTTTGGAACCCAAAATTTACTGCAAGTATACGCATTAAAAACCAAGCTCTGTTTTTAATTTGTTAAAAACGCCGAGCGTTTAAACCGATTGGTTATGCCGGAGTTGCGTCCAGTCGCTTTAGCATAAAGGGCTTTTTTTGTGGGCAGCTTTAACCATTATTTAAACACAAATGTTTTTATAGCAGCAGTCTTCACAGCGTAAGCGTGATTTAGTGCCTTTCGGAATTTTTCCAGTTTCAATGATTTGAAAAATTTCTTGTATCAATGAAATTAAATTTTCTTTTTTATTTTTTGTGATTTTTACCTCTTGTAGCTGACTGCCGTTGCGTATATATGCAATATACCCGCTTTCTACCGGTTTTTGGTAAACCTCTTCAATCAGCATTCCATATAATATAATTTGTGTTTCATGGGTTTTAAATGTTTTGTTTTGTGCTTCTGTGTACTTGTAGTCCAATGGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACCCTAAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 3 1628039-1627196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MU255056.1 Thiorhodospira sibirica ATCC 700588 ThisiDRAFT_Contig4.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1628038 37 100.0 36 ..................................... AAGTTTATCCGTCGATAATCACACAACTGGCAATAG 1627965 37 100.0 35 ..................................... CAGTACGGTCAACTCCTTAGCGGTCAAGTCAATTG 1627893 37 100.0 36 ..................................... ACACCATTGGCGAAACAATTTATATTTAATTTTTTA 1627820 37 100.0 36 ..................................... TTTGTTTTTATCAAATGCTCATGCTTTCGCTGAAAA 1627747 37 100.0 35 ..................................... TTAAGCAGCTCGGCTTGTGGCGGGTGACGCAGCAG 1627675 37 100.0 39 ..................................... CGACATACCTAAAAGAGGCCGCCCGCCCGCTAGCCAAGC 1627599 37 100.0 36 ..................................... ACGTGATTGCGCTCATCATGCGCCGCGATATTCTTC 1627526 37 100.0 37 ..................................... AACATGAGCAGCTATACGGTAACGATTGCAGGACTCG 1627452 37 100.0 35 ..................................... AAATGCACAAAGCTGCGGCTGTGCGGATCGTATAA 1627380 37 100.0 35 ..................................... AAACTCAAAATTCACAATACCACCTCAGATCTGAG 1627308 37 100.0 39 ..................................... AAACCCCACTATCGCGGGCCTGGGCCAGCGCCTGGCGAA 1627232 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 36 GTTTAAACCCTAAATCCACTACAACAAGGATTGAAAC # Left flank : GCAGCAGTGTAGCTATTTGGTTGCCGGGTTAATAATCGCGGCAGGGCTTTGATTGATTGCGCCGAGGAGTTGCGCGTGCAGTTTCAGACGGGCAGCAATGGCCTGCTGCTTTTGCTGGGATTTTTTGTGTTCGGCGATCAAGGCGCGCCGGGTGCGCTCCTGCTCGGTCATATCGCGTGACCCCTGGGAGCGCGGAGCACCAGCTCCGCATAAACTCCACGAGGCCTCCTGCAGCCTCGGCTTGCATTAAACGAAAATTTCAGTAACATCTCAGACCAGTGCCTTTTCACCAGGGCGCGACTGCTGAGACAAAAATATTGAGCTGCTGTAGGTGGCACGCTTTAAATCTTTGAAGGAAAAGCAAATAATTCGCTTTTTTCGATGTAAAGACCATGTTAAAAAGCCTTGTTATCCCTGTTTTTTATGAAAAAAGAGCCCAAAAAAAGATCTGCAATAAATCCTTATTTGATTGATTTTAAAGCGATTTACTACCAAATGGG # Right flank : CACTCAATCCAGTCCGTTATCGGCAAACTGTTGTTGAATGGCGATAAACGAATCCTGCACCGCCACAAAGGCATCCACCACAGCCGGGTCAAAGTGGCGCCCGCGCTGTTCCAGGATATAGGCCAGGGCTTGCTCGTGTGACCAGGCCGCTTTGTAGACCCGCGCCGTAGTCAGCGCATCATAGACATCGGCCAGGGCCATCAAGCGCGCCGCTAAGGGAATAGCCTGCGCGGCCAAGCCCTCTGGATAACCGGCGCCATCCCAGCGCTCATGATGGCTTTGTGCAATCACGCTGGCGACATCCAGCACCGCCAGCGCCTCGGGCCGGGATTCCTGCGTCGTCTCGATATTGGCATATACCGCCCGGTCCAGCGCCCGGCGCAAGGTGCGAGCGCCAATGGTGGTATGGGTTTGCATCACCGCCCATTCCGCCGCATCCAGCTTGCCCGGCTTTAATAAAATCCGGTCAGCAATGCCAATCTTGCCAATATCATGCAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACCCTAAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 4 1972392-1978342 **** Predicted by CRISPRDetect 2.4 *** >NZ_MU255056.1 Thiorhodospira sibirica ATCC 700588 ThisiDRAFT_Contig4.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1972392 36 100.0 34 .................................... CTCTTTAAGGAGGTTCAAAGCTAAGGTGAGGTCG 1972462 36 100.0 35 .................................... AAAATTCCAGAGCAATTCTGGTGAAACTCTGAAGC 1972533 36 100.0 36 .................................... ACATCTGCCCCACAGTGGCAGATGTTTTCCGTCACT 1972605 36 100.0 35 .................................... TTCTCCCCAGAAGCCGACACGAAATACATGTCGGC 1972676 36 100.0 32 .................................... CCTTGGACTGCGGCTTTCTCGCAATAATAGCT 1972744 36 100.0 36 .................................... TATACACGGCACGGCCAATTGCGGATCTACCGGAAT 1972816 36 100.0 32 .................................... GTCGTCCATGTTAAGACATGGACATATATTTT 1972884 36 100.0 34 .................................... GTTCCTCTTGGTCTTCGTGGTCCTCGCCTTTACG 1972954 36 100.0 33 .................................... GATTGGAATTCGCCTTGAAAAATAGGGTAAAAT 1973023 36 100.0 35 .................................... TTCGTGGTCCTCGCCTTTACGGCGGCGAGGAAAGA 1973094 36 100.0 34 .................................... CATAACCACCTCCATTGAGGTTAGCTCGACATCA 1973164 36 100.0 36 .................................... TAAAAAATACTTTATCTAAATTCTTCTTCCTTGATT 1973236 36 100.0 33 .................................... TAAATACTCTACGTCTTTCTCCAGAAGGCTTTG 1973305 36 100.0 33 .................................... TGCAGCTTTTGCCGCATAGAACTCGGCCAAGTC 1973374 36 100.0 35 .................................... CCTCGGAGAGCGCGAAGAGCCGCCCCTCAACCTCA 1973445 36 100.0 34 .................................... TTTAACAAACTGCGCATTATTTCCAGTTTTTGAT 1973515 36 100.0 35 .................................... ACAACCAATACCACAACTAACCAAATCAAAATACT 1973586 36 100.0 34 .................................... CGATATTTGTTTTTACATCCCCTACGGGCAATCC 1973656 36 100.0 34 .................................... GATAGTCTTCCTTTGGGAGGGTGTCTGGCACTTT 1973726 36 100.0 34 .................................... ACCTAATCCTAACACGACATCCATGTCGTGTGCT 1973796 36 100.0 35 .................................... TCAAGAATCTTATGCCAAACTCTTTTAGTCATGAT 1973867 36 100.0 32 .................................... GAACATTGCCGCAAAAATTGGCGGCAATTTCA 1973935 36 100.0 32 .................................... GAAGTTCCCCGATGTAATCGAGGAACTGTTGG 1974003 36 100.0 33 .................................... AAAGCGATCGTGAAAAACGTAGCCATGATGCAC 1974072 36 100.0 34 .................................... TGCGGCTTTTGCCGCATAGAACTCGGCGACATCG 1974142 36 100.0 33 .................................... CGACCAACTCGCGCTCAACACTGTAAAGCGGGG 1974211 36 100.0 34 .................................... AGTCGTCCTCTCCCGGGAGTGCGCCGCATCCGGC 1974281 36 100.0 35 .................................... TATGGGAAGTCATAGTCCTCCAAGTAAGCCCAAGA 1974352 36 100.0 34 .................................... CTTGCACGGCCACTCCCAATGAACCCCCCATGTC 1974422 36 100.0 34 .................................... AGATCATGATAATTCTCCAAAAATCCCCTTAAGG 1974492 36 100.0 33 .................................... GGGCCGAAGACGTGTCTGTACCGTGGTTCTACT 1974561 36 100.0 32 .................................... CCCTTACAGGGTATTGATACAGGCAAACCATT 1974629 36 100.0 32 .................................... ACAAACCCTACAACGAAACAGATTGCAAAAAA 1974697 36 100.0 33 .................................... GGGTGAAGACAATGCAGAAAAGAACAAAAATAG 1974766 36 100.0 34 .................................... TCTTCGGGGATGTATGCGAAAAATTGTTTTTTTG 1974836 36 100.0 38 .................................... TTCGTTGCGGATCGTTTCCTTGTGACCGGTAGCCGGAG 1974910 36 100.0 37 .................................... CCAAGCCTCTGACGAGAACTATCTTTGGTAAGGTGAT 1974983 36 100.0 32 .................................... TTGATTCTTGTTCTTGAGCTCCTCCAGGAGCT 1975051 36 100.0 33 .................................... TGTAAAAGTCACGTTCATAATTTTTAATCAGTC 1975120 36 100.0 32 .................................... TTCGGGGACGTATGCGAAAAATTTTTGTTTAA 1975188 36 100.0 34 .................................... CGCAAAAAACTGTTTTTTGAAACTAACAGTGGCC 1975258 36 100.0 32 .................................... ACCATCTCTTTGTAATCAATGGGATTGTTTGT 1975326 36 100.0 31 .................................... TTCCCAGATCGACACCGTTGTCAATGGCATC 1975393 36 100.0 31 .................................... ATATTCCCCTGAAGCCGACACGAAATACATG 1975460 36 100.0 36 .................................... AAACCGTATTTACGACGTTTATTGAAAACCGAAGAT 1975532 36 100.0 34 .................................... GCTGAGCTCTTCACGGGTAAGACTAAGTTTCTCG 1975602 36 100.0 32 .................................... TCTCGTTTTCCATAACCACCTCCATTGAGGTT 1975670 36 100.0 33 .................................... TCGTCAATGGGTACCATTGCGGTACCCTTAGAT 1975739 36 100.0 34 .................................... TTATCCTTGAGCTCATTTAAGAGCTCAAGGGCCC 1975809 36 100.0 34 .................................... AGATCCTGAAGGATCTCAAAAGCTACTTCAAAAT 1975879 36 100.0 31 .................................... CAAAGGTGGCACGCTGAAGTACCGATTAGTT 1975946 36 100.0 35 .................................... ATTTTGATCCGACGCACCACATCCTTCTGCTCGTC 1976017 36 100.0 33 .................................... TACTACCACCAACCAAATCAGCATGCTCATATC 1976086 36 100.0 33 .................................... GTCAATCGAAATGATCGCTAGACCACTACCTTA 1976155 36 100.0 35 .................................... GCCACCAGAGTGCCGATGAAGCCCACCCAGAATGC 1976226 36 100.0 35 .................................... TTCTTGCTTTTGGAACAGAAATTCCCTCTGAATAG 1976297 36 100.0 33 .................................... CGTCGTCGCCCGGGACACTGCAACATCCAGGGC 1976366 36 100.0 33 .................................... GTCTATGCGCCGCACTAAGTCCTTGACTTCGTC 1976435 36 100.0 31 .................................... TGATGCGCAGCATCGTTCAATGTATACATGG 1976502 36 100.0 34 .................................... TCCCCACCAGCCAACGGATTGCTCCGCTGGCACG 1976572 36 100.0 34 .................................... ATGTACTCAGCACCTCCCAGCCAATTCCATTGGG 1976642 36 100.0 33 .................................... AGTCATGTCATTCTCCAATTATCGTCTGATATG 1976711 36 100.0 33 .................................... AGTCATGTCATTCTCCAATTATCGTCTGATATG 1976780 36 100.0 34 .................................... AAAGAAGTTATTAAAACTTTATCTTTGCCTAGGG 1976850 36 100.0 36 .................................... GCAGACCGTTACTTAAGTAAGTAACGGTCCTCAGCT 1976922 36 100.0 34 .................................... TTTGTGTGGCACCACACTGGTGCCTTTTTTTACC 1976992 36 100.0 33 .................................... ATGGTTTCTACCAGTTTACGGGTCGCCCAAAAA 1977061 36 100.0 34 .................................... GCCGAGGACCGTTACTTACCGAGTAACTGGTCTT 1977131 36 100.0 34 .................................... AATGGGGACTGAGAAGGATATACCCTCTCAGTCC 1977201 36 100.0 33 .................................... AAAACTTTTTGCCTTGGACCTCCTTCAGGAGTT 1977270 36 100.0 35 .................................... TTCTTTCAGGGCGCTCAGGGTATTGGAGATGCACC 1977341 36 100.0 35 .................................... TTCTTTCAGGGCGCTCAGGGTATTGGAGATGCACC 1977412 36 100.0 32 .................................... CAGAAGGAACAAGACTGGTAGCGAAAAAAACG 1977480 36 100.0 35 .................................... CTTGCATCACGGAGGCGCCATCCGTGGCCAGCATT 1977551 36 100.0 34 .................................... CCCCAGAAGCCGACACGAAATACATGTCGGCTTC 1977621 36 100.0 34 .................................... AAGACCATCAATGTGGTCTTCAAGGAGTTGAATC 1977691 36 100.0 33 .................................... CCCCTCATCGGGGATGTATGGGAAGAACCGGTT 1977760 36 100.0 32 .................................... GTGTGAATACGGCCATATTCACACCCCATTCG 1977828 36 100.0 31 .................................... TGTGCTCTTCGGTTAACTTTTTCCCTTTGAG 1977895 36 100.0 33 .................................... ATAGATAGTATGAAGATTAAATCCTTTTATTTT 1977964 36 100.0 31 .................................... TGCTCTTCCGTCAACGTTTTGCTCTTGAGCT 1978031 36 100.0 34 .................................... ATCTCCTAGGGAGGCTGCTATTTCAGCCTCCCTC 1978101 36 100.0 34 .................................... CGCTGGCTCGCCAGCGAGATAGCCAATCCCTGGC 1978171 36 100.0 33 .................................... AGCCTCTGCAGAGAACTATTTGTGGTAAGGTGA 1978240 36 97.2 31 ...............................G.... GACAGAAGCGGACACTAAGCTTTGAGCTTAG 1978307 36 94.4 0 ...............................G...T | ========== ====== ====== ====== ==================================== ====================================== ================== 86 36 99.9 34 GTTTGACCGATGCCCTGATTTAAAAGGGATTAAGAC # Left flank : CAAAAAAATCAACACGAACACCACCAGACCCAACAAAACCAACAAAACACCCGACACCAGCGCCAAACCCTCAAACACACCCTGGAAATCAAAGAAAACCGAAAAGAAATCAAACGCCTGCAAAACCTCCTTGAAAAAGAAAAACACCTTACGATAAAACACAGCCTCCAACGTGAAAATCAACAACGCGAATACCACAAAGCCCAACAAACCATCGAAAAACTAAAAAAAGAAAATCAAACACTTAAAGCACAACTCGCCATCCAGCGCAAAGCCAAAACACAGCCCACAGACCCCATGGACTAACCCAAAAACCGCACCTTCAAAAAAATACCTAACGGCAAAATAAAAAAAATGCCCCAAAGACTTGACCACAAAATACACCCTGTGATACCGTAAACCACGGTCAAACGAAAAGGCAGCCCGAAGGTGAAAAAAACGGTCAAAAATGGCGCTACAGCAGGCTTACACAGCCCTCTAACGCCCCCACAACCCAGTGG # Right flank : TTTAAGAAAAAAGCCGAGTCATGATGACTCGGCTTTTTTATTTTTAGATTAAGTAAGTTTTCCAAACAACCACCCCATCCCTTCTTAAAAAAGGCTGGATGCCGCCCTCCCGGCCTATGCTAAACTGCCCACCCAGAACACGCCCAAACGCCCAGACACCTCATGAGCAACCACCACGACAGCGGCTACAAAGAACTGTTCAGCTACCCCGAGCTGGTCCGCCAGCTCATCGAAGGCTTTGCGCCCCAAGAAATCGCCGCCATGATGGACTTTACTACCCTCACCGACCACAGCGGCAACTACATCACGCCGTTGTTCAATGAAAAATTCGAAGACAAAGTCTGGTCTGTGCAACTCCACGGGGAAGAAAACACACAACAGGTCTTTGTCTACCTGCTGTTAGAATTTCAATCCACGGTAGACTACCGCCTGCCGATCCGGCTGCTGCACTACGTCGCCTGCTTTTACGACCACCTGCTCAAAACCAAAGCCACCACCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCGATGCCCTGATTTAAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //