Array 1 730-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAB01000343.1 Salmonella enterica strain BCW_6138 NODE_343_length_957_cov_1.88085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 729 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 668 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 607 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 546 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 485 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 424 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 363 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 302 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 241 29 96.6 32 ............T................ ATATTTTGGCAACTCGTCGTACATTATCGCCA 180 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 119 29 100.0 32 ............................. TCTTTGTGGTAAATATGGAATCGATTAACCCC 58 29 100.0 0 ............................. | A [31] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCTAGTGCTGCGCATTCTTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36920-32862 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAB01000035.1 Salmonella enterica strain BCW_6138 NODE_35_length_43289_cov_6.83701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36919 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGATATGATGGTC 36858 29 100.0 32 ............................. CTCTATCCGAACACTGCGGACGTGCAGCAGGC 36797 29 100.0 32 ............................. CGGGCAGGTCGACAGCAAAAACTACCGGGCAA 36736 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGAGCCCATGAGGT 36675 29 100.0 32 ............................. AAAATGATCGGCTTAACGCTGTGATTCTTTAC 36614 29 100.0 32 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGA 36553 29 100.0 32 ............................. GTTGGTTCAGTTAATTATTAGTGAGCTGCGGG 36492 29 100.0 32 ............................. TCGGAACCTACGCCTTAGTTACAGGCATTAAT 36431 29 100.0 32 ............................. CATCTCGAAAAACTTGGTTGTTTTGAAAAACC 36370 29 100.0 32 ............................. CGCTGAGGAACAGGCCGCACGCAATCTTAATG 36309 29 100.0 32 ............................. AAATCCGCATTTTAATTGATATTATCGGGGAC 36248 29 100.0 32 ............................. TTTGCACTGAACATGCTGAAGGTTATTCGTAA 36187 29 100.0 32 ............................. CGCGAACAAATGCCCTTACCTGCTTAGTCTTG 36126 29 100.0 32 ............................. CGCGCCCGGTCGATTCTCTGGCCTGTTGCGCC 36065 29 100.0 32 ............................. CACGTCTACTGCGTCAGTTGTACCGGCTACAT 36004 29 100.0 32 ............................. AACATTCTCACTCCTTTCTTAATTGAATATGA 35943 29 100.0 32 ............................. GACCGGCAAAATAACGACCTGGACGCCGCCGA 35882 29 100.0 32 ............................. GAACTCAGCCTGAAAGCGCCCGTATACCGGAC 35821 29 100.0 32 ............................. CGCTTATTAGCAGTTCAGGCCGCTCTAGAGGT 35760 29 100.0 32 ............................. TTTTTTTCGACGTCCCGGAGAGTTATTTGCGG 35699 29 100.0 32 ............................. CGACGCTGGAGACCTCATATCAGTCAATAAAT 35638 29 100.0 32 ............................. CATCCAAAAACCCCTGGGACGGGCAAACGGGA 35577 29 100.0 32 ............................. ACTATAGCGCGCTCTCTGCCCTCGATCCTGTA 35516 29 100.0 32 ............................. GATTATATTCAATTTCATGCGGTGATGATTGT 35455 29 100.0 32 ............................. GATTTCGGAAAGAGCAACCCGCTGGCAGATGA 35394 29 100.0 32 ............................. CCCATTATTGTGCTGCCGCCATCAGGTTCTGC 35333 29 100.0 32 ............................. ATTTTTACATAACGCCCTGATGCCATGTTCTG 35272 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 35211 29 100.0 32 ............................. GCCGTATCTAAATAATATGTGCTAATTGGTGC 35150 29 100.0 32 ............................. CGGAGTGAGAGCGCTAACCTTTCTGACTGCCC 35089 29 100.0 32 ............................. ATTTGGCGTGAGAGTGTTACGCCCGAACTGGT 35028 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCGATG 34967 29 100.0 32 ............................. AATAGCGAAACCGTGCCAGCTTTAAACTACAG 34906 29 100.0 32 ............................. AGCGGGAGACCTTGATTGTCCAGACGTTGGGG 34845 29 100.0 32 ............................. CCTGCGCATTCTTTTACAGTCAGCCAGATATC 34784 29 100.0 32 ............................. CAACCATCACAGGGTTAACTGCGGGCGTTGGT 34723 29 100.0 32 ............................. AACGTCTTTATGCGGTTTTGTGTCGCCGGAAA 34662 29 100.0 33 ............................. CGTTCGCGTGCTTGAGGCGCTCACCCAATGCGC 34600 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACGCTGACACCA 34539 29 100.0 32 ............................. TACCATCCTCATATCGTTTTTGAGTTATATCG 34478 29 100.0 32 ............................. AAGAAAATCTTTAACTATGTGCTGATGAACAG 34417 29 100.0 32 ............................. GCACCGGGCAACGCGCGCCATGGTCCCGCACA 34356 29 100.0 32 ............................. ACAGAGACGCGCCCACCGTTCAGCCCTGGAAA 34295 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 34234 29 100.0 32 ............................. AATGGAGCCGTGCCGGACGAGTTGTGGATGGC 34173 29 100.0 32 ............................. ATATGCTGAGAATTCTTTTGGCTTCAAATAAA 34112 29 100.0 32 ............................. GGGCGATAACAGAATGGAATTAACAAAAGAGC 34051 29 100.0 32 ............................. TAGGCGTCACAACCTGCTCCGCGTCGTTAACG 33990 29 100.0 32 ............................. GTTTTTCTCTTGAGCCAGGATTCGCTTGCTTG 33929 29 100.0 32 ............................. TGTCCGATCTTTATGATGAAGAAAAGACGCTA 33868 29 100.0 32 ............................. CCAACATACTCCTTCGGCGGCGTGTCGATACC 33807 29 96.6 32 .....T....................... TCGGCCCTCAGGATATTGAAGGCCGGACACAT 33746 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAGATC 33685 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 33624 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 33563 29 100.0 32 ............................. GAAAGAGAACTTTGCGAATCAGGTCAATGCCC 33502 29 100.0 32 ............................. TTTCTGACTTTTGAGGGGGATATTTAGACGGG 33441 29 100.0 32 ............................. CCAGTGCTGTTATCTTCTACCTCTCCCACCCA 33380 29 100.0 32 ............................. GAGTGATATCACAATTTAATTTTTATTTTGTA 33319 29 100.0 32 ............................. TTCAGCCACAGGCTTGGTTCGTGGCGGCGTTC 33258 29 100.0 32 ............................. TCCCACGCGTCGTCGTCAAACTGCGATTTCGG 33197 29 100.0 32 ............................. AAAAAGCTGAACGCGAAAGCAAAAAGTAACTC 33136 29 100.0 32 ............................. AACTAGCGCCTGCTCCGGACGGCTTGCCCTCT 33075 29 100.0 32 ............................. GTTCCAGGTAGATACCGATCCCCTGGCGAATC 33014 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 32953 29 100.0 33 ............................. GTTCGCTTCATACGCCTCCGCATCGAAATTTGC 32891 29 100.0 0 ............................. | A [32864] ========== ====== ====== ====== ============================= ================================= ================== 67 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58-756 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAB01000376.1 Salmonella enterica strain BCW_6138 NODE_376_length_806_cov_1.57028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 119 29 100.0 32 ............................. GGGGAATGATGAAACGAATTAGTAAAAACAAA 180 29 100.0 32 ............................. AAATGGCATAGCCACCCCAGACAGTGGCTTCT 241 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 302 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 363 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTAAC 424 29 100.0 32 ............................. CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG 485 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 546 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 607 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 668 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 729 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTCTTCCGATCTCGGGGATAAACCGCGTTTATCGCTCTGAGAGTGGCGCTCGTTACTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-552 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAB01000502.1 Salmonella enterica strain BCW_6138 NODE_502_length_557_cov_1.86345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 96 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 158 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 219 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 280 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 341 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 402 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 463 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 524 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCGATCTTTATTTACGACATTAACATTAACCGTG # Right flank : CGTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11913-13589 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAB01000065.1 Salmonella enterica strain BCW_6138 NODE_65_length_23844_cov_6.64734, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11913 29 100.0 32 ............................. CGCACGTTGAGAGCGGAATGCCGATTCCTCCG 11974 29 100.0 32 ............................. CAAATGCATAGCAAATGCATAGCATAAACATA 12035 29 100.0 32 ............................. GTCCTGGCATTCGGTATCCCCGGCGAATTTTA 12096 29 100.0 32 ............................. GAAATCGCCACGGTGATTCCGTCTAACAGCCG 12157 29 100.0 32 ............................. CGAGTACTATCCAAGTCCTGTATGGACCGCAA 12218 29 100.0 32 ............................. GGATCAAGAATGCTGATATTGTTGATGCTCTA 12279 29 100.0 32 ............................. CTGAAGGTTTACGGGCCGGAATTACCGCGACC 12340 29 100.0 32 ............................. CGAATCCGACCTCTAAAATTATGCGTAGACCA 12401 29 100.0 33 ............................. GAGGCCCAATACTACACGCAATTAAGGCTACGC 12463 29 100.0 32 ............................. TGGCTGAACAAACGCACCGGCGAATACGAGTC 12524 29 100.0 32 ............................. CCGTACCATTGCCCAGCTCCTGCAGGATGGTG 12585 29 100.0 32 ............................. GTTTATGCCAGCGGCAGTACAGGGACGATCAC 12646 29 100.0 32 ............................. TCGAACTGGTAACGCAGCCCTGTACGATGTGC 12707 29 100.0 32 ............................. CATATTATCCAGGCTGAATCCACTTAAATTTG 12768 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 12829 29 100.0 32 ............................. AGCAGGGGGTTATTCAATACAGCCCTTGACGT 12890 29 100.0 32 ............................. GAGTGTTAGGGAACCTGGTTGATGTGTCAAAC 12951 29 100.0 33 ............................. CCGATCAGCCTGATGACCGATTTAATTAAACCC 13013 29 100.0 32 ............................. CTCGTCGTCTTTTTTTTCGCTCATTTTTTCGG 13074 29 100.0 32 ............................. TTCCCATTGTTTTTTTTGCCCATGTTAGCGCA 13135 29 100.0 32 ............................. ATCAGGTTTTGGGGCTGGCTCCGTAGGTGTTT 13196 29 100.0 32 ............................. GGACTACCCGCAGATAAGTTCAGCGAACGTGC 13257 29 100.0 32 ............................. CCTCCCGGGAGACGGTCAGTCGGGCGCTGTTA 13318 29 100.0 32 ............................. GCGGCGAATATCATGATCGTTGTCCCGATCAG 13379 29 100.0 32 ............................. GTTGGCTGTAGTGTTGCAACGCTTGAGGAAGC 13440 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 13501 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 13562 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATACCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //