Array 1 383189-384804 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTI01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 32 NODE_1_length_619395_cov_10.9562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 383189 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 383251 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 383312 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 383373 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 383434 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 383495 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 383556 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 383617 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 383678 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 383739 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 383800 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 383861 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 383922 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 383983 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 384044 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 384105 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 384166 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 384227 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 384289 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 384350 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 384411 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 384472 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 384533 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 384594 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 384655 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 384716 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 384777 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 401087-402923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTI01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 32 NODE_1_length_619395_cov_10.9562, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 401087 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 401148 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 401209 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 401270 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 401332 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 401393 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 401454 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 401515 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 401576 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 401637 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 401698 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 401759 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 401820 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 401881 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 401942 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 402003 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 402064 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 402125 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 402186 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 402247 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 402305 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 402366 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 402427 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 402488 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 402549 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 402610 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 402671 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 402772 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 402833 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 402894 29 93.1 0 A...........T................ | A [402920] ========== ====== ====== ====== ============================= ======================================================================== ================== 30 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //