Array 1 169876-170443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJD01000004.1 Pectobacterium brasiliense strain Y62 Y62.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 169876 28 96.4 32 ...........T................ TGTTGCGATTTCGGCGTCAAAAAACCGACCAC 169936 28 92.9 32 ..........AT................ AGCAGGATACACATAAGGGTCACGGCGGCACG 169996 28 100.0 32 ............................ AGGATACGCGGCAAGCGGCGTATGGTCAGCCC 170056 28 100.0 33 ............................ GAGCATATCCTTTCAGATTTGCGGCTTTGGGAA 170117 28 100.0 32 ............................ TGACTGACGCTAAATCCAACATTTCCTGTTCA 170177 28 100.0 32 ............................ TACACCTACCAGCTAATGGTAATCCGCACCTG 170237 28 100.0 32 ............................ AACAAACCAATTAGTGAAGTGATTGCGGAGAT 170297 28 92.9 32 ...........TG............... GCGCTGCCACCCTTCGGATCGTTGTCGAGAAT 170357 27 92.9 32 ...........T..-............. TCAACTGTGCACTGGGGATCGGGGCTATTTCA 170416 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCATTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATGAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACGG # Right flank : AATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCACTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178117-176346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJD01000004.1 Pectobacterium brasiliense strain Y62 Y62.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178116 28 100.0 32 ............................ GATCTCTTCCGCTGGCAGGCCGTATTCAACGA 178056 28 100.0 32 ............................ ATTCCCCCCATAAGGCGCGAATCTGTGAGGCA 177996 28 100.0 32 ............................ CCTGAACCCGGCCACTGAGCCGGGTTTTTTGT 177936 28 100.0 32 ............................ TCAGCGCAAGGTACGGACACAATCGAGGTTGC 177876 28 100.0 32 ............................ TGGAATATTTCGCCCATCGCACGCTGGCTGTC 177816 28 100.0 32 ............................ AGCTGTCGCTGGTCTCCATTGCGGTCATATTG 177756 28 100.0 33 ............................ ATCCCAGCGACTGCCGGGACGTTCGTGATCGGC 177695 28 100.0 32 ............................ CGCTCGCGCTCGATCCGCTGCCGTTCTGTGGT 177635 28 100.0 32 ............................ AGCACCCAATTGATTGATGAGGCTATGACGTT 177575 28 100.0 32 ............................ TTTATCGTCGGTAGCCAGTGAGTAAATAGCTT 177515 28 100.0 32 ............................ TGAACAGCGAGCCAGATGAGCGACTCAATGCG 177455 28 100.0 32 ............................ GTATCAACCTCGATCTGACGCTTGGATGCACC 177395 28 100.0 32 ............................ ACACCGGATGAGGCGTTCCAGGTATCGAATAA 177335 28 100.0 32 ............................ AGTTCCGCAGAGAGAATTGCCGCCATTGCCAC 177275 28 100.0 32 ............................ TTCTGCAACTTCGATCTCTTTCGCTTCTTCCC 177215 28 100.0 32 ............................ GCGTTGTCATCTTCGGTAAGCTGGCTGAAATT 177155 28 100.0 32 ............................ AGTGATTAACATCCGTAAAGCGCAACGTGAAG 177095 28 100.0 32 ............................ ATTCCCGGCTATCGCTCAACACTTCGCGCCCA 177035 28 100.0 32 ............................ TCGGCTGCTAATACCACCAGTAGCAACTAATA 176975 28 100.0 32 ............................ ACTACAGCCACATCGACAACAAGCGCAAATGG 176915 28 100.0 33 ............................ CCTCGGTGTTTACCGTGCCGAACCCGTCCTGAC 176854 28 100.0 32 ............................ GTTGAAGCGCTCAAGGTCATGGATGCGTGGGG 176794 28 100.0 32 ............................ GTACTTGAAGCCATTCAATCTGTATTGAAATC 176734 28 100.0 32 ............................ TGTGGCACTGGACTGATGCGCGACTTCACTGA 176674 28 100.0 33 ............................ TGACTCGCCCCCACCTTGGGGGTTTTTCTTTCC 176613 28 100.0 32 ............................ TGCTGGCTACGGGCCGCAATCTGTATCGTCCC 176553 28 100.0 32 ............................ TGTAGGCGTCGAATTAAATCGCTCATCCTGTG 176493 28 100.0 32 ............................ ATCAACGCGATAACCTGTTAAATATTTTGATG 176433 28 96.4 32 ..................C......... CAGACGCCGTCGCTGCCGACTGCCTGAACTTT 176373 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACAAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : TAGTTTTAAGCGTCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAAGCGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 186689-187195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJD01000004.1 Pectobacterium brasiliense strain Y62 Y62.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 186689 28 100.0 32 ............................ TAGGATAATGGGGGAATAAATGGACGCTCAGG 186749 28 100.0 32 ............................ GTCAACTTTTTGTTCGATCATTTGCTGGCGAG 186809 28 100.0 32 ............................ ACAGATATTATCGTTCATCGTGGCTTCCTGTA 186869 28 100.0 32 ............................ CATTCTCATTCAGAATCGTGCTGAACTGATGC 186929 28 100.0 32 ............................ CGTTTCTGAGCGAGTTATGACGTTTAACGAGT 186989 28 82.1 32 .T.A....T..T........A....... ATAAAAAAGCCCGCAGCGATTATCAGCAGGCT 187049 28 82.1 32 .T.......T.T.C...T.......... ATGACAGGAAAACCAGCGCCAGCAGCCACGGA 187109 28 96.4 32 .T.......................... GTCGCGTCGTTGCCGCCACTTGCCGCTCCCGC 187169 27 82.1 0 .T.........T.C.........-..T. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 93.6 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCCACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTATAGAACATGGTCCGCTACAGAATGCTCCTAGCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAGGGTTTTTCGCGATAAAATGAGTATTCTCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : ACTATCGAAATGCGTCGCTGGCGCGACGCATTTTTGAGGACTACTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGACTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATAGGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //