Array 1 218411-216183 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKT01000011.1 Actinomyces oris strain A7A-1 A7A-1_contig012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218410 29 96.6 32 ............................T AAAGGCTCAAGTTGGGCTATAACCATCATATC 218349 29 100.0 32 ............................. GGCGTACCCGCTGGTCACTACCGTCATTTTTG 218288 29 96.6 32 ............................T ACCCCTCAAGGTCGGCAATTAACTGGGAGTCC 218227 29 96.6 32 ............................G CAATTCCAATCCGAAGTGGCACACACACGATT 218166 29 100.0 32 ............................. TGAACTGAACTGAAAGTAGCCATAAGAAAGGA 218105 29 96.6 33 ............................T GTGCGCCGTCATCAAGGCCAGCAACTGGGGCGG 218043 29 100.0 32 ............................. AGTCTGAGTATTGTCGCCAACACTCCCACCAT 217982 29 100.0 32 ............................. TTTCTTGGCCGTTGCGTCCCATGCCATAGTTT 217921 29 100.0 32 ............................. GAAGCGTGAGGATTCCACTGTCGTCGGCACTA 217860 29 96.6 32 ............................G ATAAACTCAAGGATGTTCAATATCACGTCAAG 217799 29 100.0 32 ............................. AGTCTGAGTGTTGTCGCCAACACTCCCACCAT 217738 29 100.0 32 ............................. ACCAGACGTGTCCTTGGTCTTAATAATCTGAT 217677 29 100.0 32 ............................. ACCGTCATACGGGCGCGCCCAACCAGGGAGGT 217616 29 100.0 32 ............................. ACGGCACGAGCACGTGGCTGGCTGGTCGAGCC 217555 29 96.6 32 ............................T GCCGGCGATCTTGGCGGCGTCACAGAAGGTGC 217494 29 96.6 32 ............................T CGTCGGCGCGGTCGGTTGAGGACCAGCAGCTG 217433 29 96.6 32 ............................G CGGCTGATCCATCAGGGAGCGAATCTGCTCCG 217372 29 100.0 32 ............................. CTCGCGGGGATAGGGTAAGATGGGCCTATAAG 217311 29 100.0 32 ............................. TTGCCGAGCCGGGCCATCACCCATGCGAGTGC 217250 29 96.6 32 ............................G TCGCACTACTGGTACCGCGCCAAGCCCGGCAC 217189 29 96.6 32 ............................G CGTCGGACCTGCCGGCCCCAGGCCGTGGCCAG 217128 29 100.0 32 ............................. GACGCCGTGATGCGAATGGAGGGGGACAAGAA 217067 29 96.6 32 ............................G GACATGGCTGGGGCCCTGCCTGGGAGATGGGT 217006 29 100.0 32 ............................. ACTCCTGGAAATGGTGGGAGTATTGGAGAGAA 216945 29 96.6 32 ............................G GGCTCGGCCCCACGGAAGTACTGATCGCCCGT 216884 29 96.6 32 ............................T AGTGAGCAATTCCAGTCTGAAGTTGCGCACAC 216823 29 100.0 32 ............................. ACCTGAGTAAGAGTGGTGCCCTGTGAGAAATA 216762 29 100.0 32 ............................. ACCGTGCCAGCTAACGCACCGCTCGAGCACCG 216701 29 100.0 32 ............................. GCCTGACCGTTACCGGCCCACCATGCTCCTTG 216640 29 100.0 32 ............................. AGCCCGCCCGGCAGACACAAAAAAGCGCCCCG 216579 29 100.0 32 ............................. ACCAGCGAGTACTCCTGGGACGACGGCGGACT 216518 29 100.0 32 ............................. AAACCCCAACAACCCCAGGGGATAACCCCCCA 216457 29 96.6 33 ............................G TAGGCGTTCTTGGTGGCTGCGCTGGGGAGGGTG 216395 29 96.6 32 ...........A................. ACGGCGTAGGAGCCGGCGAGCATCATGAAAGA 216334 29 100.0 32 ............................. GCGGAGGCAGTCACGCGCGCCCTGGAGCAGCT 216273 29 100.0 32 ............................. TGCGCAGCAATGGTGGTGGGAGACCATGGCGC 216212 29 79.3 0 ..G...................ACGG..T | A [216186] ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.1 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCTGGTGGGGCGAACTACGCCGGAGAGGACGCAGGAGGATGGTAGTCCTGATCCTTTCCGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTAGAAGTCTCTCCTGGGGTCTTCGTCGGGCATCTCTCCGCTCGAGTGCGAGAGCAGTTGTGGGAGTTGGTGCGCGCATACATCGGGGAGGGGCGGGCTCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCTTCTCTGGGGCACGAGCGTGAACCAGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATTCCCGGCGCCGTCAAGGCGCCAAAGGAGTCCTGGTCGATCGCTGCAAGACGACGACGCTATCGGAACTCTGCGGAGCGAGCGCTAGGTCGGCAGTGAAGGCAAACGCAGTCTGGTAGGGTCACTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : GTGTGCTTGAGGTGGCGTGACCGGGTCATGAGTCCGGGGCGCCTGGACCGGTGCCCACCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTTCGTTGTGGCCGACCCGACTGCGAAGGAGCCCACCGCCACGGTTGCGAAGGTCGCCGAGTCGGCCGTGGGGACCGGCGAGGCCTGACTCAACACGCCCAGTAAATTACTTTACAAATATATCTGGTGTGATGCAGGATAAAGCCGTTGCCCGACCACCAGGGTCTGGTTGGGCAACGGCGTGCTCCTGTTCCCCCAGGGTCGCCTTTCTCATCTCCCTAGCTGGTACTCGTCAGGCCGCCAACATGGCGGTCTGAGGGGCGTGCGCGTGTCCCCTTCCTGGGGTGGGGCTGCCGGCACTCTCATTAAGAGGTGTTGACAATGAGTGTCAAAGGTGCTGCAGAGGTCATTTTCTCCCCGCCGGTTCAGAACTGGTTGAAGCGGGCGATCTACCGTCATAACTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2069-3104 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKT01000012.1 Actinomyces oris strain A7A-1 A7A-1_contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 2069 35 100.0 36 ................................... ACGGTATTGATGATGAAGTTGATCGGCTTCGCTGCG 2140 35 100.0 36 ................................... GTCATTCCCATGTCGCAGAACGGGACACCGGACTGC 2211 35 97.1 36 .T................................. CGAATCCCAGGTCCCCGAAAATCACGCCATTCGGGC 2282 35 100.0 36 ................................... CACGCCAACACCACCAGAGAGGTGTCCGCGGACTTG 2353 35 100.0 35 ................................... TTGACTTGGGTGGCCACCAGGTAGTCCATGTCCGG 2423 35 100.0 36 ................................... TGTCCTTTGATCTTGGTGACGGAGTCGTCCATGGTG 2494 35 100.0 36 ................................... TCGTGCGCCCATAAGTCCGTGTCCTGGCACCCCTGC 2565 35 97.1 35 .T................................. AGGCCACTCCTGCGGCCGAATGCGAGGTCCCTGAC 2635 35 94.3 37 .T.....C........................... TCGGGCACCCTCGACCTGAACCGCTGCCGCGACCGCG 2707 35 94.3 40 ...A.............................T. TTCCCAGTCCAGAAGTCGTTGATCTCCAGGAGGGCCTCCC 2782 35 100.0 37 ................................... AGGAACGGCCACTGGGCGTAGTCACGCCGCATGGGAC 2854 35 97.1 37 ..........................T........ CATGCAAAGCGGCCCACAAAGCTCCGCATCGTCAGGC 2926 35 100.0 36 ................................... TTGGTCAGGACACGGTGAACAGCATCGACGGCGTTA 2997 35 100.0 38 ................................... ACCACCAAACAGAGTCGGACGGTCCAGCAAGCCACCAC 3070 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.5 37 TCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Left flank : TACAAGGGAGTGACGGTGCGCTGATGCGTGATGATGTCAGACGCGTTCTCGTGGCCTACGACGTCCCGTCCGACCGGCGCCGAACGCGGGTGGCGAAGACTCTGTTGAAGTACGGGGACCGCATCCAGTACTCCGTGTTCGTCGTGGATGCGGCGCCGGCCAAGCTCCTGCGGATGCGGGGAGAGCTGGAAGGAGTCATCAAGACGGACGAGGACTCCGTGCTCCTGTGCGATGTTGGTCTGCTGTCCTCAGTTGATGAACAGCGATTCTCCTATGTCGGCCTGACCAGGACGATCACACCAGAGGGGCCGCTTATCGCCTGATGCGAGCGCTCTGGTGCTCGAGGATCCCCGGGCAGCGCTCGCAGCGGTAGAGCGTTGAAATGGCGGGGATTCTGTGAGGTGGGGTGAGGGTTGGGGTGGCTGGGTGGAAGTCCGAGCACGGAGCGCTCGCGAAGCCTCCTCAGATGGACGTGGTGGCGGGCTATACTGAGTGGGCCG # Right flank : TAGGTGGGGATTGATGCACATATTGTGGTCGTCATTCCCCGCCTACTCCGCCTACTGCTCTTTGTGCGTCACCTTCCAGGCGCGCCTGGCCCCCTCCAGGGCGGTGGGCAGGGCGGCGAGCAGGCGCTCGACGTCGTCGGGGCTCGTCTCCCGGCCCAGGGAGCAGCGCAGGGTGGAGCGGGCCGGCCCCTCCTGAAAGCCCATCGCCAGGAGCACGTGACTGGGCTGGGTGACCCCGGCGTGGCAGGCCGACCCCGCAGATGCATCAATCCCCGCCAGGTCCAGGGCCATGAGCAGCGCCTCGGCGTCGGCCTGCTCGAACCACAGGTGCGCCGTGGAAGCCACATGATCGGCACCTTCCGGCAACGTGGCGTGAACACCCGCAAGCGCCCCCGCACCCTCAAGGATCCGACGCCGCAGCACCGCCAGCCGGGCCTCCTGCTCCTCCCGCTCGGCGACCGCCAGCTCCACCGCCAGGGCCAGCGCCCGAGCCGCCACCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCAGTTCCTTCGGGAACTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //